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Clean up stale mock parameters and dead code (#133) #162

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Triggered via push July 28, 2026 11:53

rcannood

main

Status Failure

Total duration 19m 59s

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build.yaml

on: push

build / Build target branch

Matrix: build / Build

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1 error and 33 warnings

build / Build (cycombine_all_controls_to_mid, methods, executable, docker, src/methods/cycombine_all_cont...

Process completed with exit code 1.

build / Build target branch

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build / Build (functional_marker_preservation, metrics, executable, docker, src/metrics/functional_marker...

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build / Build (cycombine_no_controls_to_goal, methods, executable, docker, src/methods/cycombine_no_contr...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cytonorm_all_controls_to_mid, methods, executable, docker, src/methods/cytonorm_all_contro...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cycombine_one_control_to_goal, methods, executable, docker, src/methods/cycombine_one_cont...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cycombine_no_controls_to_mid, methods, executable, docker, src/methods/cycombine_no_contro...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (shuffle_integration_within_batch, control_methods, executable, docker, src/control_methods...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cytonorm_all_controls_to_goal, methods, executable, docker, src/methods/cytonorm_all_contr...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (batchadjust_all_controls, methods, executable, docker, src/methods/batchadjust_all_control...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (rpca_to_goal, methods, executable, docker, src/methods/rpca_to_goal/config.vsh.yaml, targe...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (shuffle_integration_within_cell_type, control_methods, executable, docker, src/control_met...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (emd, metrics, executable, docker, src/metrics/emd/config.vsh.yaml, target/executable/metri...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (average_batch_r2, metrics, executable, docker, src/metrics/average_batch_r2/config.vsh.yam...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (shuffle_integration_globally, control_methods, executable, docker, src/control_methods/shu...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (batchadjust_one_control, methods, executable, docker, src/methods/batchadjust_one_control/...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cytonorm_one_control_to_mid, methods, executable, docker, src/methods/cytonorm_one_control...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (combat, methods, executable, docker, src/methods/combat/config.vsh.yaml, target/executable...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cytonorm_no_controls_to_mid, methods, executable, docker, src/methods/cytonorm_no_controls...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (perfect_integration, control_methods, executable, docker, src/control_methods/perfect_inte...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (gaussnorm, methods, executable, docker, src/methods/gaussnorm/config.vsh.yaml, target/exec...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cycombine_one_control_to_mid, methods, executable, docker, src/methods/cycombine_one_contr...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (limma_remove_batch_effect, methods, executable, docker, src/methods/limma_remove_batch_eff...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (no_integration, control_methods, executable, docker, src/control_methods/no_integration/co...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cytonorm_one_control_to_goal, methods, executable, docker, src/methods/cytonorm_one_contro...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cycombine_all_controls_to_mid, methods, executable, docker, src/methods/cycombine_all_cont...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cytonorm_no_controls_to_goal, methods, executable, docker, src/methods/cytonorm_no_control...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (rpca_to_mid, methods, executable, docker, src/methods/rpca_to_mid/config.vsh.yaml, target/...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (cycombine_all_controls_to_goal, methods, executable, docker, src/methods/cycombine_all_con...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (harmonypy, methods, executable, docker, src/methods/harmonypy/config.vsh.yaml, target/exec...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (flowsom_mapping_similarity, metrics, executable, docker, src/metrics/flowsom_mapping_simil...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (lisi, metrics, executable, docker, src/metrics/lisi/config.vsh.yaml, target/executable/met...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

build / Build (ratio_consistent_peaks, metrics, executable, docker, src/metrics/ratio_consistent_peaks/co...

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/