re-enabling rpca and n peaks

Author: ghar1821

src/methods/rpca_to_goal/config.vsh.yaml

@@ -1,6 +1,6 @@
 __merge__: ../../api/comp_method.yaml
 name: rpca_to_goal
-status: disabled
+# status: disabled
 label: Seurat RPCA (to-goal)
 summary: "Batch integrate data to a goal batch using mutual nearest neighbors identified via Seurat reciprocal PCA."
 description: |

src/methods/rpca_to_mid/config.vsh.yaml

@@ -1,6 +1,6 @@
 __merge__: ../../api/comp_method.yaml
 name: rpca_to_mid
-status: disabled
+# status: disabled
 label: Seurat RPCA (to-middle)
 summary: "Batch integrate data to a midpoint using mutual nearest neighbors identified via Seurat reciprocal PCA."
 description: |

src/workflows/run_benchmark/config.vsh.yaml

@@ -109,7 +109,7 @@ dependencies:
   - name: methods/rpca_to_goal
   - name: methods/rpca_to_mid
   - name: metrics/emd
-  # - name: metrics/n_inconsistent_peaks
+  - name: metrics/n_inconsistent_peaks
   - name: metrics/average_batch_r2
   - name: metrics/flowsom_mapping_similarity
   - name: metrics/cms

src/workflows/run_benchmark/main.nf

@@ -40,7 +40,7 @@ methods = [
 // construct list of metrics
 metrics = [
   emd,
-  // n_inconsistent_peaks,
+  n_inconsistent_peaks,
   average_batch_r2,
   flowsom_mapping_similarity,
   cms,