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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1- # The API specifies which type of component this is.
2- # It contains specifications for:
3- # - The input/output files
4- # - Common parameters
5- # - A unit test
61__merge__ : ../../api/comp_method.yaml
7-
8- # A unique identifier for your component (required).
9- # Can contain only lowercase letters or underscores.
102name : rpca_to_goal
11- # A relatively short label, used when rendering visualisations (required)
3+ status : disabled
124label : Seurat RPCA (to-goal)
13-
14- # A one sentence summary of how this method works (required). Used when
15- # rendering summary tables.
165summary : " Batch integrate data to a goal batch using mutual nearest neighbors identified via Seurat reciprocal PCA."
17-
18- # A multi-line description of how this component works (required). Used
19- # when rendering reference documentation.
206description : |
217 Seurat RPCA performs batch integration by projecting each query dataset into the PCA space
228 of a goal batch, and identifying anchors using reciprocal PCA (RPCA).
@@ -48,9 +34,7 @@ references:
4834 }
4935
5036links :
51- # URL to the documentation for this method (required).
5237 documentation : https://satijalab.org/seurat/articles/integration_rpca.html
53- # URL to the code repository for this method (required).
5438 repository : https://github.com/satijalab/seurat
5539
5640argument_groups :
Original file line number Diff line number Diff line change 1- # The API specifies which type of component this is.
2- # It contains specifications for:
3- # - The input/output files
4- # - Common parameters
5- # - A unit test
61__merge__ : ../../api/comp_method.yaml
7-
8- # A unique identifier for your component (required).
9- # Can contain only lowercase letters or underscores.
102name : rpca_to_mid
11- # A relatively short label, used when rendering visualisations (required)
3+ status : disabled
124label : Seurat RPCA (to-middle)
13-
14- # A one sentence summary of how this method works (required). Used when
15- # rendering summary tables.
165summary : " Batch integrate data to a midpoint using mutual nearest neighbors identified via Seurat reciprocal PCA."
17-
18- # A multi-line description of how this component works (required). Used
19- # when rendering reference documentation.
206description : |
217 Seurat RPCA performs batch integration by identifying mutual nearest neighbors (anchors)
228 between all batches using reciprocal PCA (RPCA).
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