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disabling seurat rpca for now
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Lines changed: 2 additions & 32 deletions

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src/methods/rpca_to_goal/config.vsh.yaml

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# The API specifies which type of component this is.
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# It contains specifications for:
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# - The input/output files
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# - Common parameters
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# - A unit test
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__merge__: ../../api/comp_method.yaml
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# A unique identifier for your component (required).
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# Can contain only lowercase letters or underscores.
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name: rpca_to_goal
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# A relatively short label, used when rendering visualisations (required)
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status: disabled
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label: Seurat RPCA (to-goal)
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# A one sentence summary of how this method works (required). Used when
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# rendering summary tables.
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summary: "Batch integrate data to a goal batch using mutual nearest neighbors identified via Seurat reciprocal PCA."
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# A multi-line description of how this component works (required). Used
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# when rendering reference documentation.
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description: |
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Seurat RPCA performs batch integration by projecting each query dataset into the PCA space
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of a goal batch, and identifying anchors using reciprocal PCA (RPCA).
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}
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links:
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# URL to the documentation for this method (required).
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documentation: https://satijalab.org/seurat/articles/integration_rpca.html
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# URL to the code repository for this method (required).
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repository: https://github.com/satijalab/seurat
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argument_groups:

src/methods/rpca_to_mid/config.vsh.yaml

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# The API specifies which type of component this is.
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# It contains specifications for:
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# - The input/output files
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# - Common parameters
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# - A unit test
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__merge__: ../../api/comp_method.yaml
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# A unique identifier for your component (required).
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# Can contain only lowercase letters or underscores.
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name: rpca_to_mid
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# A relatively short label, used when rendering visualisations (required)
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status: disabled
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label: Seurat RPCA (to-middle)
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# A one sentence summary of how this method works (required). Used when
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# rendering summary tables.
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summary: "Batch integrate data to a midpoint using mutual nearest neighbors identified via Seurat reciprocal PCA."
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# A multi-line description of how this component works (required). Used
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# when rendering reference documentation.
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description: |
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Seurat RPCA performs batch integration by identifying mutual nearest neighbors (anchors)
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between all batches using reciprocal PCA (RPCA).

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