Add results processing script

[rcannood]

Describe your changes

This PR adds a results processing script. It has been generalised a bit and has been moved into the common repo. To try it out:

$ common/scripts/render_results_report --help
Usage: render_results_report [OPTIONS] MODE

A script to render benchmark reports from results data.
Automatically detects AWS CLI availability and falls back to Docker if needed.

MODES:
    local <path>        Process results from a local directory
    s3 <s3_path>        Process results from a specific S3 path
    latest              Process the latest results from S3
    select              Show selection window of different runs

OPTIONS:
    -h, --help          Show this help message
    -o, --output DIR    Output directory (default: output/report)
    -t, --task NAME     Task name (auto-detected from _viash.yaml if not provided)
    -v, --verbose       Enable verbose output
    --dry-run           Show commands that would be executed without running them

EXAMPLES:
    render_results_report latest
    render_results_report s3 s3://openproblems-data/resources/task_cyto_batch_integration/results/run_20241010
    render_results_report local /path/to/local/results
    render_results_report select
    render_results_report -o custom_output latest

If aws cli isn't installed, the aws cli calls are run via Docker.

Checklist before requesting a review

• I have performed a self-review of my code

• Check the correct box. Does this PR contain:

  • Breaking changes
  • New functionality
  • Major changes
  • Minor changes
  • Bug fixes

• Proposed changes are described in the CHANGELOG.md

• CI Tests succeed and look good!

[rcannood]

This should work, but only assuming:

• that the user has aws cli installed
• that the last benchmark run has finished successfully

If either of these assumptions are not true, you could define the run id manually.

Edit: Nvm! I fixed this ;)

[LuLeom]

@ghar1821 does it work for you?

@rcannood It is not a problem with the script itself, rather a problem with fetching the submodule updates.

[LuLeom]

@rcannood tried to git pull from add_results_processing branch.
A script render_report.sh seems to be there, but it is saved in the scripts/ folder and it tries to run a render_results_report which is not there.

From the repo's root directory:

The reason why it fails it's because nothing is fetched in common/scripts/

[ghar1821]

@rcannood, the select option can't fetch any runs.

bash common/scripts/render_results_report select  
Fetching available runs...
common/scripts/render_results_report: line 179: readarray: command not found

1) 
2) Quit
Select a run (1-2): 2
Selection cancelled.
Operation cancelled by user.

Does this only work for a full run? i.e., with all methods and metrics? I just pull results from one partial run and i couldn't get any tables to render.