From 940767d04c1c88f33c3b049b344812d43816363c Mon Sep 17 00:00:00 2001 From: Robrecht Cannoodt Date: Tue, 28 Jul 2026 13:08:34 +0200 Subject: [PATCH 1/2] point the full run scripts at build/main * run_full_hpc.sh was still pinned to build/update_ilisi * run_full_seqeracloud.sh labelled the full run as test_subset --- scripts/run_benchmark/run_full_seqeracloud.sh | 2 +- scripts/run_benchmark/wehi_hpc/run_full_hpc.sh | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/scripts/run_benchmark/run_full_seqeracloud.sh b/scripts/run_benchmark/run_full_seqeracloud.sh index baa19b656..cee2a9138 100755 --- a/scripts/run_benchmark/run_full_seqeracloud.sh +++ b/scripts/run_benchmark/run_full_seqeracloud.sh @@ -28,4 +28,4 @@ tw launch https://github.com/openproblems-bio/task_cyto_batch_integration.git \ --params-file /tmp/params.yaml \ --entry-name auto \ --config common/nextflow_helpers/labels_tw.config \ - --labels task_cyto_batch_integration,test_subset + --labels task_cyto_batch_integration,full diff --git a/scripts/run_benchmark/wehi_hpc/run_full_hpc.sh b/scripts/run_benchmark/wehi_hpc/run_full_hpc.sh index 5e70ecb2a..1b6a7bd02 100644 --- a/scripts/run_benchmark/wehi_hpc/run_full_hpc.sh +++ b/scripts/run_benchmark/wehi_hpc/run_full_hpc.sh @@ -21,7 +21,7 @@ publish_dir: "$publish_dir" HERE tw launch https://github.com/openproblems-bio/task_cyto_batch_integration.git \ - --revision build/update_ilisi \ + --revision build/main \ --pull-latest \ --main-script target/nextflow/workflows/run_benchmark/main.nf \ --workspace 80689470953249 \ From fec055708331d169c8778a9c321e954e375e9117 Mon Sep 17 00:00:00 2001 From: Robrecht Cannoodt Date: Tue, 28 Jul 2026 13:10:31 +0200 Subject: [PATCH 2/2] update changelog --- CHANGELOG.md | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 271fda0d5..3e917c923 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -239,4 +239,7 @@ and thus can't be directly overriden (new values given by get_donor_batch_map is int) (PR #119). * Update flowsom mapping similarity so we subset to just markers to correct, and lisi to remove control samples - and unlabelled cells (PR #119). \ No newline at end of file + and unlabelled cells (PR #119). + +* Point `scripts/run_benchmark/wehi_hpc/run_full_hpc.sh` at `build/main` instead of + `build/update_ilisi`, and label the seqera full run as `full` instead of `test_subset` (PR #129).