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    112 repositories

    • persist-seq-galaxy-tools-setup

      Public
      Python
      •0•0•0•1•Updated Sep 3, 2026Sep 3, 2026

    • n-alkylation-prediction

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2026Sep 2, 2026

    • atropisomers_workflow

      Public
      Risk assessment of atropisomers with cheminformatics and QM.
      epex
      epex
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•1•1•Updated Aug 20, 2026Aug 20, 2026

    • GenCDR

      Public
      Generative antibody language models for framework-conditioned CDR design, scoring, and preference-based alignment.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 19, 2026Aug 19, 2026

    • uffpsim

      Public
      C++
      •
      MIT License
      •1•1•0•0•Updated Aug 18, 2026Aug 18, 2026

    • ontoverse-app

      Public
      Ontoverse web app for cartographic exploration of knowledge spaces, nurtured by the ontoverse-kg-choreographer
      TypeScript
      •
      Apache License 2.0
      •1•7•1•6•Updated Aug 7, 2026Aug 7, 2026

    • cellatria

      Public
      An Agentic AI Framework for Ingestion and Standardization of Single-Cell RNA-seq Data Analysis
      Python
      •
      Apache License 2.0
      •26•89•1•0•Updated Aug 6, 2026Aug 6, 2026

    • awesome-drug-discovery-knowledge-graphs

      Public
      A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets re…
      knowledge-graphdrug-discoveryawesome-list
      knowledge-graphdrug-discoveryawesome-listdrug-discovery-knowledge-graph
      Apache License 2.0
      •31•269•0•0•Updated Jul 27, 2026Jul 27, 2026

    • Madsen_etal_2026

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • Oligo-Analytical-Characterization

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jul 24, 2026Jul 24, 2026

    • ontoverse-kg-choreographer

      Public
      Pipeline for assembling the knowledge graph nurturing the ontoverse-app
      Python
      •
      Apache License 2.0
      •0•1•1•6•Updated Jul 21, 2026Jul 21, 2026

    • ISpyMSI

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•2•Updated Jul 17, 2026Jul 17, 2026

    • fdu-pisi

      Public
      Fundamental Dynamical Units for Physics-Informed Structural Inference
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Jul 17, 2026Jul 17, 2026

    • Stochastic-gates-for-covariate-selection-in-population-pharmacokinetics-modelling-

      Public
      Code to accompany paper
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•1•Updated Jul 17, 2026Jul 17, 2026

    • mosses

      Public
      Toolkit for analysing molecular property predictive models.
      Python
      •
      Apache License 2.0
      •1•2•0•0•Updated Jul 17, 2026Jul 17, 2026

    • multimodal_data_fusion

      Public
      Python
      •3•3•0•3•Updated Jun 10, 2026Jun 10, 2026

    • NurtureSubmission

      Public
      Python
      •0•0•0•1•Updated Jun 5, 2026Jun 5, 2026

    • data-science-python-course

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •18•26•0•0•Updated May 22, 2026May 22, 2026

    • boat

      Public
      Multi-objective Bayesian optimization for antibody lead optimization with multiple property predictors
      Python
      •3•6•2•12•Updated May 20, 2026May 20, 2026

    • Deam_GNN_briefings_bioinformatics

      Public
      ESM and ESM+GNN models for predicting asparagine deamidation in biologics — code accompanying the Briefings in Bioinformatics publication.
      Python
      •
      Apache License 2.0
      •1•0•1•0•Updated May 18, 2026May 18, 2026

    • MVDA_exploration_tools

      Public
      Multivariate data analysis (MVDA) exploration tool is a Python library utilizing the scikit-learn library for partial least squares (PLS) and principal componen…
      Jupyter Notebook
      •
      Apache License 2.0
      •2•7•0•0•Updated May 6, 2026May 6, 2026

    • PGEL

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • r-package-prime

      Public
      R package PRIME
      HTML
      •
      MIT License
      •0•0•2•0•Updated Apr 29, 2026Apr 29, 2026

    • runnable

      Public
      Runnable
      Python
      •
      Apache License 2.0
      •4•52•7•3•Updated Apr 27, 2026Apr 27, 2026

    • smoothed-hazard-simulation-external

      Public
      Smoothed Hazard Simulation Study
      R
      •
      Apache License 2.0
      •0•0•1•0•Updated Apr 21, 2026Apr 21, 2026

    • FWAnalysis

      Public
      Free Wilson analysis
      Python
      •
      Apache License 2.0
      •1•1•1•0•Updated Apr 15, 2026Apr 15, 2026

    • RBSB

      Public
      R code for the Robust Bayesian Sequential Borrowing (RBSB) simulation study and case study analysis accompanying the publication.
      R
      •
      Apache License 2.0
      •0•0•1•0•Updated Apr 15, 2026Apr 15, 2026

    • peptide-tools

      Public
      Collection of tools to calculate properties of natural or synthetic peptides and proteins.
      Python
      •
      MIT License
      •13•76•0•1•Updated Apr 13, 2026Apr 13, 2026

    • G-SPAID

      Public
      G-function Area Spatial Proximity Analysis Independent of cell Density
      R
      •
      Apache License 2.0
      •1•0•1•0•Updated Apr 10, 2026Apr 10, 2026

    • vlm

      Public
      Official implementation for "Diffusion Instruction Tuning"
      post-trainingmultimodal-alignmentsupervised-finetuning
      post-trainingmultimodal-alignmentsupervised-finetuningvision-language-modelmultimodal-large-language-models
      Python
      •5•35•0•0•Updated Apr 1, 2026Apr 1, 2026
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