EPFL-Center-for-Imaging repositories

52 repositories

splinebox
Public
A python package for fitting splines.
Python
•
BSD 3-Clause "New" or "Revised" License
•3•24•8•1•Updated Oct 11, 2026Oct 11, 2026
awesome-scientific-image-analysis
Public
Scientific image analysis resources and software tools.
awesome awesome-list image-analysis
awesome awesome-list image-analysis scientific-imaging
Creative Commons Zero v1.0 Universal
•5•49•1•0•Updated Oct 9, 2026Oct 9, 2026
lutuflow
Public
A toolbox to segment and track lung tumor nodules in longitudinal series of mice CT scans.
cancer-imaging-research
cancer-imaging-research
Python
•
GNU Affero General Public License v3.0
•1•3•0•0•Updated Oct 1, 2026Oct 1, 2026
napari-confeta
Public
Configurable Features Table for Napari
napari-plugin
napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Sep 23, 2026Sep 23, 2026
tau-fibrils-yolo
Public
Detection of Tau fibrils in EM images.
yolo cryo-em alzheimers-disease
yolo cryo-em alzheimers-disease napari-plugin ultralytics
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Aug 27, 2026Aug 27, 2026
dev-longitudinal-tumour-segmentation-and-tracking
Public
Python
•1•0•0•0•Updated Jun 24, 2026Jun 24, 2026
segmentation-challenge
Public
Challenge your image segmentation skills (workshop)
Python
•
MIT License
•0•0•0•0•Updated Jun 9, 2026Jun 9, 2026
napari-splinebox
Public
A napari plugin to create splines.
Python
•
BSD 3-Clause "New" or "Revised" License
•0•1•1•0•Updated May 27, 2026May 27, 2026
vision-workshop
Public
Introduction to Machine Learning for Vision Applications
Python
•
BSD 3-Clause "New" or "Revised" License
•1•1•0•0•Updated Apr 29, 2026Apr 29, 2026
workshop-transformers
Public
Introduction to machine learning with the transformers library
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Apr 22, 2026Apr 22, 2026
gemma4-marimo-demo
Public
Demonstrating Gemma4's vision capabilities (Marimo notebook)
Python
•0•0•0•0•Updated Apr 20, 2026Apr 20, 2026
yolo-workshop
Public
Workshop - Object Detection with Ultralytics YOLO
epfl yolo workshop-materials
epfl yolo workshop-materials ultralytics smart-microscopy
Python
•
BSD 3-Clause "New" or "Revised" License
•0•3•0•0•Updated Mar 25, 2026Mar 25, 2026
python-setup
Public
Setting up Python for scientific image analysis
0•0•0•0•Updated Mar 9, 2026Mar 9, 2026
python-intro-images
Public
Jupyterlite deployment of the Imaging Lunch "Introduction to Python for Image Analysis"
Jupyter Notebook
•0•0•0•0•Updated Mar 6, 2026Mar 6, 2026
ImagingLunch_IntroductionToPytorch
Public
Material for the imaging lunch on pytorch
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•3•0•0•Updated Jan 19, 2026Jan 19, 2026
napari-ortho-plotter
Public
Interactively plot the image intensity along the depth axis of a 3D image dataset.
napari-plugin
napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•1•1•0•0•Updated Dec 8, 2025Dec 8, 2025
napari-orientationpy
Public
2D and 3D grayscale orientation analysis in Napari.
image-processing napari-plugin
image-processing napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•2•0•0•Updated Oct 5, 2025Oct 5, 2025
ImagingLunch_ImagesInPython
Public
Introduction to Python for Image Analysis
Jupyter Notebook
•0•2•0•0•Updated Sep 11, 2025Sep 11, 2025
orientationpy-binderhub
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Jul 7, 2025Jul 7, 2025
fiji-binderhub
Public
DeconvolutionLab2 runnable example on Binder
Dockerfile
•
MIT License
•0•1•0•0•Updated May 28, 2025May 28, 2025
ezomero
Public
A module with convenience functions for writing Python code that interacts with OMERO.
Python
•
GNU General Public License v2.0
•17•0•0•0•Updated May 28, 2025May 28, 2025
DeconvolutionImagingLunch
Public
Jupyter Notebook
•0•0•0•0•Updated May 14, 2025May 14, 2025
napari-adaptive-painting
Public
Propagate label annotations in Napari.
napari-plugin image-annotation-tool
napari-plugin image-annotation-tool
Python
•
BSD 3-Clause "New" or "Revised" License
•1•0•0•0•Updated May 6, 2025May 6, 2025
ome2glancer
Public
This package creates neuroglancer links to open ome-zarr files.
Python
•
BSD 3-Clause "New" or "Revised" License
•0•2•0•0•Updated Apr 4, 2025Apr 4, 2025
ImagingLunch_nD_Image_Visualization
Public
Material for the imaging lunch on nD image visualization
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Mar 18, 2025Mar 18, 2025
napari-melt-pool-tracker
Public
Napari plugin for tracking the width and depth of the melt pool and keyhole in x-ray images of laser powder bed fusion experiments.
Python
•
BSD 3-Clause "New" or "Revised" License
•1•3•0•0•Updated Feb 20, 2025Feb 20, 2025
pyxu-tutorial
Public
Material accompanying the Pyxu tutorial presentation
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•2•0•0•Updated Feb 12, 2025Feb 12, 2025
mousetumortrack
Public archive
Tracking tumor nodules in mice CT scans.
tracking cancer-imaging-research
tracking cancer-imaging-research
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Dec 17, 2024Dec 17, 2024
pyxudeconv
Public
Python
•
MIT License
•0•0•0•0•Updated Dec 11, 2024Dec 11, 2024
mousetumornet
Public archive
A model for lung tumor nodules segmentation in mice CT scans.
cancer-imaging-research image-segmentation napari-plugin
cancer-imaging-research image-segmentation napari-plugin nnunet-v2
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

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EPFL Center for Imaging

All

52 repositories

splinebox

awesome-scientific-image-analysis

lutuflow

napari-confeta

tau-fibrils-yolo

dev-longitudinal-tumour-segmentation-and-tracking

segmentation-challenge

napari-splinebox

vision-workshop

workshop-transformers

gemma4-marimo-demo

yolo-workshop

python-setup

python-intro-images

ImagingLunch_IntroductionToPytorch

napari-ortho-plotter

napari-orientationpy

ImagingLunch_ImagesInPython

orientationpy-binderhub

fiji-binderhub

ezomero

DeconvolutionImagingLunch

napari-adaptive-painting

ome2glancer

ImagingLunch_nD_Image_Visualization

napari-melt-pool-tracker

pyxu-tutorial

mousetumortrack

pyxudeconv

mousetumornet

Repositories list

52 repositories