USCbiostats repositories

144 repositories

annoq-site-v2
Public
Annoq Site React
TypeScript
•0•0•9•0•Updated Sep 1, 2026Sep 1, 2026
annoq-site
Public
TypeScript
•2•0•15•1•Updated Aug 31, 2026Aug 31, 2026
annoq-api-v2
Public
Python
•1•0•6•0•Updated Aug 31, 2026Aug 31, 2026
PM566-bots
Public
1•0•0•0•Updated Aug 31, 2026Aug 31, 2026
LUCIDus3
Public
LUCID version 3, a major update and enhancement from the original release, implements different integration strategies for multi-omics data with multiple layers…
R
•
Other
•1•2•0•0•Updated Aug 30, 2026Aug 30, 2026
annoq-database
Public
Python
•0•0•2•0•Updated Aug 28, 2026Aug 28, 2026
PM566
Public
USC's Introduction to Health Data Science
data-science machine-learning course
data-science machine-learning course dataviz course-materials datascience rstats webscraping
R
•29•18•2•1•Updated Aug 28, 2026Aug 28, 2026
PM566-whoami
Public
152•1•0•1•Updated Aug 27, 2026Aug 27, 2026
annoq-data-builder
Public
Shell
•0•0•3•0•Updated Aug 25, 2026Aug 25, 2026
aphylo
Public
Statistical inference of genetic functions in phylogenetic trees
r annotations inference
r annotations inference phylogenetics r-package rcpparmadillo
R
•
Other
•2•6•8•0•Updated Aug 16, 2026Aug 16, 2026
slurmR
Public
slurmR: A Lightweight Wrapper for Slurm
bioinformatics hpc slurm
bioinformatics hpc slurm rstats rpackage
R
•
Other
•11•61•19•1•Updated Aug 16, 2026Aug 16, 2026
fmcmc
Public
A friendly MCMC framework
r parallel-computing bayesian-inference
r parallel-computing bayesian-inference adaptive r-package mcmc markov-chain-monte-carlo metropolis-hastings
R
•
Other
•7•16•7•1•Updated Aug 16, 2026Aug 16, 2026
annoq-proj
Public
AnnoQ Project Hub - Central Project information and workflow hub for the AnnoQ platform
0•0•1•0•Updated Aug 14, 2026Aug 14, 2026
barryr
Public
R bindings for the barry C++ library, your go-to motif accountant
statistics rstats r-package
statistics rstats r-package r-programming r-library motifs
C++
•
Other
•0•0•0•0•Updated Aug 6, 2026Aug 6, 2026
PM516A
Public
0•0•0•0•Updated Jul 31, 2026Jul 31, 2026
LAsBEST
Public
Repository of USC's LA's BEST program. https://lasbest.usc.edu/
training education datascience
training education datascience biostatistics rstats rprogramming nih
HTML
•6•4•1•0•Updated Jul 21, 2026Jul 21, 2026
PM516
Public
0•0•0•0•Updated Jul 20, 2026Jul 20, 2026
PM516B
Public
0•0•0•0•Updated Jul 20, 2026Jul 20, 2026
barry
Public
barry: Your go-to motif accountant
graph motif enumeration
graph motif enumeration ergm exponential-family counting-statistics change-statistics
C++
•
MIT License
•0•8•2•1•Updated Jul 16, 2026Jul 16, 2026
Annoq_Overrepr_Workflow
Public
A workflow to query Annoq and run the overrepresentation
TypeScript
•2•0•0•0•Updated Jun 24, 2026Jun 24, 2026
pgscorer
Public
Compute Polygenic Risk Scores from PGS Catalog models
R
•
Other
•0•1•0•0•Updated Jun 18, 2026Jun 18, 2026
tabixr
Public
Fast VCF region queries via Tabix — Rcpp/Rhtslib with RAII memory management
C++
•0•0•0•0•Updated May 28, 2026May 28, 2026
GxEScanR
Public
R version of GxEScan
R
•2•9•3•0•Updated May 28, 2026May 28, 2026
lsReg
Public
C++
•0•0•0•0•Updated May 28, 2026May 28, 2026
BinaryDosage
Public
Converts VCF files to a binary format
R
•2•1•0•0•Updated May 28, 2026May 28, 2026
software-dev
Public
Coding Standards for the USC Biostats group
r hpc reproducible-research
r hpc reproducible-research standards reproducibility
HTML
•7•37•0•1•Updated May 5, 2026May 5, 2026
annoq-py
Public
Python package for annoq-api-v2
Python
•
MIT License
•2•0•0•0•Updated Apr 30, 2026Apr 30, 2026
AnnoQR
Public
R client wrap for AnnoQ API
R
•
MIT License
•3•2•4•0•Updated Apr 30, 2026Apr 30, 2026
PRSfromPGS
Public
R
•
Other
•0•0•0•0•Updated Apr 28, 2026Apr 28, 2026
LUCIDus
Public
the new version of LUCID
R
•4•8•3•0•Updated Apr 7, 2026Apr 7, 2026

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USC Division of Biostatistics

All

144 repositories

annoq-site-v2

annoq-site

annoq-api-v2

PM566-bots

LUCIDus3

annoq-database

PM566

PM566-whoami

annoq-data-builder

aphylo

slurmR

fmcmc

annoq-proj

barryr

PM516A

LAsBEST

PM516

PM516B

barry

Annoq_Overrepr_Workflow

pgscorer

tabixr

GxEScanR

lsReg

BinaryDosage

software-dev

annoq-py

AnnoQR

PRSfromPGS

LUCIDus

Repositories list

144 repositories