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@VirtualFlyBrain Virtual Fly Brain

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    133 repositories

    • vfb-image-derivatives

      Public
      Thumbnails, WLZ and point-cloud OBJ for the VFB image store (Argo image-derivatives workflow)
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2026Oct 14, 2026

    • VFB_connectomics_import

      Public
      A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.
      HTML
      •0•0•5•18•Updated Oct 14, 2026Oct 14, 2026

    • VFBquery

      Public
      A high-performance Python library providing optimized programmatic access to the VirtualFlyBrain knowledge graph, with faster queries through intelligent cachin…
      Python
      •
      Apache License 2.0
      •0•1•5•1•Updated Oct 14, 2026Oct 14, 2026

    • VFB_reporting_results

      Public
      Repository containing the results of various data change and consistency checking.
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•2•2•0•Updated Oct 14, 2026Oct 14, 2026

    • VFB_json_schema_indexer

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 13, 2026Oct 13, 2026

    • vfb-status

      Public
      Uptime tracker for public-facing Virtual Fly Brain services
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2026Oct 13, 2026

    • ask-vfb

      Public
      Python
      •1•1•1•1•Updated Oct 13, 2026Oct 13, 2026

    • Docker-VFB-Neo4j-ProductionDB

      Public
      Neo4j server loaded with the VFB Production DB
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•1•Updated Oct 13, 2026Oct 13, 2026

    • VFB2

      Public
      Virtual Fly Brain Documentation Site
      Python
      •
      MIT License
      •9•17•123•1•Updated Oct 12, 2026Oct 12, 2026

    • geppetto-vfb

      Public
      VFB (v2) application
      JavaScript
      •
      Other
      •3•11•66•12•Updated Oct 12, 2026Oct 12, 2026

    • virtual-fly-brain

      Public
      VFB v3 development
      JavaScript
      •2•0•2•0•Updated Oct 12, 2026Oct 12, 2026

    • VFB_neo4j

      Public
      A python package for writing schema-compliant content to VFB neo4J DBs
      neo4jowlflybase
      neo4jowlflybase
      Python
      •
      Apache License 2.0
      •1•0•66•22•Updated Oct 12, 2026Oct 12, 2026

    • vfb-pipeline-collectdata

      Public
      Shell
      •
      Apache License 2.0
      •0•0•8•1•Updated Oct 12, 2026Oct 12, 2026

    • vfb-region-connectivity

      Public
      Python
      •0•0•0•0•Updated Oct 12, 2026Oct 12, 2026

    • VFB_connect

      Public
      A library for querying VFB servers (neo4j, owlery, solr)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•7•30•0•Updated Oct 12, 2026Oct 12, 2026

    • vfb-driver-ontology

      Public
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 12, 2026Oct 12, 2026

    • VFB_json_schema

      Public
      VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests
      Python
      •
      Apache License 2.0
      •0•0•31•7•Updated Oct 12, 2026Oct 12, 2026

    • geppetto-client

      Public
      The web client of a Geppetto application
      JavaScript
      •
      Other
      •3•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • vfb-pipeline-updatetriplestore

      Public
      Shell
      •
      Apache License 2.0
      •0•0•1•2•Updated Oct 9, 2026Oct 9, 2026

    • vfb-pipeline-dumps

      Public
      Pipeline that creates dumps from the triplestore for consumption by the downstream services
      Python
      •
      Apache License 2.0
      •0•0•14•3•Updated Oct 9, 2026Oct 9, 2026

    • neo4j2owl

      Public
      Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.
      vfbvirtualflybrain
      vfbvirtualflybrain
      Java
      •
      Apache License 2.0
      •4•7•17•32•Updated Oct 9, 2026Oct 9, 2026

    • Docker-CATMAID

      Public
      CATMAID server loaded with public EM data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 6, 2026Oct 6, 2026

    • vfb-prod

      Public
      Shell
      •
      Apache License 2.0
      •0•0•2•0•Updated Oct 6, 2026Oct 6, 2026

    • vfb-neurotransmitter-predictions

      Public
      Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.
      Makefile
      •0•0•0•0•Updated Oct 2, 2026Oct 2, 2026

    • vfb-scRNAseq-gene-annotations

      Public
      Makefile
      •0•0•0•0•Updated Oct 2, 2026Oct 2, 2026

    • vfb-EPseq-ontology

      Public
      Makefile
      •0•0•0•0•Updated Oct 2, 2026Oct 2, 2026

    • vfb-scRNAseq-ontology

      Public
      An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
      Makefile
      •0•0•1•1•Updated Oct 2, 2026Oct 2, 2026

    • vfb-extension-ontology

      Public
      A small application ontology used by VFB.
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•2•0•Updated Oct 2, 2026Oct 2, 2026

    • VFB3-MCP

      Public
      Explore Virtual Fly Brain data directly through your favourite LLM with the new VFB Model Context Protocol (MCP) tool
      mcpneuroscienceontology
      mcpneuroscienceontologyconnectomicsdrosophila-melanogastervirtualflybrainllmmcp-server
      TypeScript
      •
      MIT License
      •4•9•0•1•Updated Sep 25, 2026Sep 25, 2026

    • VFB_reporting

      Public
      Scripts for reporting on the state of VFB content and pipeline
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•10•12•Updated Sep 22, 2026Sep 22, 2026
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