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@bioinformatics-ua UA.PT Bioinformatics

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    95 repositories

    • BioASQ14b

      Public
      Code for participation in BioASQ Task 14b
      Python
      •0•1•0•0•Updated Jul 4, 2026Jul 4, 2026

    • fed-research

      Public
      TypeScript
      •0•0•0•0•Updated Jun 28, 2026Jun 28, 2026

    • concept-browser

      Public
      Concept Browser is a web application that allows researches to evaluate the feasibility of a medical study by evaluating the amount of the data available for th…
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated May 19, 2026May 19, 2026

    • ArchEHR-QA-2026

      Public
      Jupyter Notebook
      •0•3•0•0•Updated May 10, 2026May 10, 2026

    • SmartMobilitySimulation

      Public
      Python
      •0•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • CMToolkit

      Public
      The Cohort Migration Toolkit
      Python
      •1•8•0•0•Updated Feb 7, 2026Feb 7, 2026

    • SmartCampus-databases-benchmark

      Public
      A benchmarking framework for evaluating database systems on time-series data from a smart campus WiFi scenario.
      Go
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • BioASQ13B

      Public
      Code for participation in BioASQ Task 13b
      Python
      •3•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • dicoogle-learning-pack

      Public
      Resources for users and developers of Dicoogle
      SCSS
      •5•0•0•0•Updated Apr 22, 2025Apr 22, 2025

    • NetworkDashboards

      Public
      Dashboards showing intrinsic meta data for the OMOP-CDM databases in the GREG data network
      Python
      •3•0•0•0•Updated May 28, 2024May 28, 2024

    • HealthDBFinder

      Public
      Python
      •0•1•0•0•Updated Apr 21, 2024Apr 21, 2024

    • KNOWLAM

      Public
      Python
      •0•1•0•0•Updated Feb 1, 2024Feb 1, 2024

    • biodata-starter-kit-se-deployment-notes

      Public
      Documentation of deployment of the GDI starter kit in Portuguese node
      MIT License
      •0•1•0•0•Updated Jun 1, 2023Jun 1, 2023

    • BioAnswer

      Public
      BioAnswer
      JavaScript
      •0•1•0•0•Updated May 22, 2023May 22, 2023

    • GDI_Pipeline

      Public
      A Pipeline for comparing GATK and Deepvariant
      Python
      •
      MIT License
      •1•4•0•1•Updated May 3, 2023May 3, 2023

    • PrivacyCDM

      Public
      Privacy preserving techniques applied to OMOP CDM
      Python
      •0•1•0•0•Updated Apr 17, 2023Apr 17, 2023

    • montra2

      Public
      Montra 2.0: An scalable architecture for profiling distributed databases
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Mar 29, 2023Mar 29, 2023

    • PEI-detector-models

      Public
      A list of models capable of detect computed-generated text from human
      Python
      •0•1•0•0•Updated Mar 17, 2023Mar 17, 2023

    • biocreativeVII_track2

      Public
      BioCreative VII NLM-Chem track: full-text chemical identification and indexing in PubMed articles
      Python
      •
      MIT License
      •0•7•1•0•Updated Feb 3, 2023Feb 3, 2023

    • incubator-superset

      Public
      Apache Superset (incubating) is a modern, enterprise-ready business intelligence web application
      Python
      •
      Apache License 2.0
      •18k•2•0•9•Updated Jan 27, 2023Jan 27, 2023

    • MicroGES

      Public
      R solution to identify gene expression signatures in microarray datasets
      R
      •
      GNU General Public License v3.0
      •1•3•1•0•Updated Jan 4, 2023Jan 4, 2023

    • Diseasecard

      Public archive
      Rare Diseases Portal using COEUS framework
      JavaScript
      •1•0•0•0•Updated Dec 14, 2022Dec 14, 2022

    • ArcadeBattle

      Public archive
      Serious games for hand arthritis rehabilitation
      JavaScript
      •1•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • PatientFM

      Public archive
      Patient Family History extraction tool
      Python
      •
      MIT License
      •2•1•0•0•Updated Dec 8, 2022Dec 8, 2022

    • xgTaxonomy

      Public archive
      Python
      •2•0•0•0•Updated Nov 30, 2022Nov 30, 2022

    • COMPACT

      Public
      Compressor Benchmark Taxonomic Classification
      Python
      •1•3•0•0•Updated Nov 22, 2022Nov 22, 2022

    • BioASQ

      Public
      Deep architectures for biomedical question answering
      Python
      •1•2•0•6•Updated Nov 21, 2022Nov 21, 2022

    • GeoDropdown.js

      Public archive
      Geo Dropdown component for javascript
      JavaScript
      •2•0•0•0•Updated Nov 12, 2022Nov 12, 2022

    • BioKBQA

      Public
      BioKBQA - Biomedical Knowledge Base Question Answering
      Java
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Nov 3, 2022Nov 3, 2022

    • midas

      Public
      MIDAS is a multi-framework DataLoader that can be leverage to produce highly efficient data pipelines
      Python
      •0•6•0•0•Updated Oct 18, 2022Oct 18, 2022
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