Repositories list

• intranet.neuro.polymtl.ca

  Public
  NeuroPoly's lab manual

  websitedocumentationdeep-learning+ 5

  websitedocumentationdeep-learningwikihardwareneuroscienceaccountssphinx-doc

  HTML

  •99 forks•77 stars•4646 issues•22 pull requests•Updated Sep 7, 2026Sep 7, 2026

• slicer-cart

  Public
  Case Annotation and Review Tool (CART) Module for 3D Slicer

  Python

  •

  GNU Lesser General Public License v3.0

  •33 forks•22 stars•5151 issues•11 pull request•Updated Sep 3, 2026Sep 3, 2026

• SmaugLab

  Public
  This repository investigates the influence of different data augmentation strategies on MRI training performance.

  Python

  •

  GNU General Public License v3.0

  •00 forks•77 stars•1414 issues•77 pull requests•Updated Sep 2, 2026Sep 2, 2026

• pacs-ai-sandbox

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 25, 2026Aug 25, 2026

• neuro.polymtl.ca

  Public
  NeuroPoly's Website

  websitedocumentationsphinx+ 1

  websitedocumentationsphinxneuroscience

  Python

  •1010 forks•44 stars•2626 issues•33 pull requests•Updated Aug 23, 2026Aug 23, 2026

• simpleReg

  Public
  A simple tool for 3D image/volume registration

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 21, 2026Aug 21, 2026

• pediatric-mtbi-clustering

  Public
  Latent-space analysis of pediatric brain MRI for mTBI detection using autoencoder-based representations

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 12, 2026Aug 12, 2026

• totalspineseg

  Public
  Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

  mrisegmentationspine+ 8

  mrisegmentationspinespinal-cordsegmentation-modelsnnu-net3d-medical-imagesvertebraevertebrae-segmentationvertebrae-identification+ 1

  Python

  •

  GNU Lesser General Public License v3.0

  •1111 forks•115115 stars•2020 issues•11 pull request•Updated Aug 10, 2026Aug 10, 2026

• template

  Public
  A framework for creating unbiased MRI templates of the spinal cord

  Python

  •

  MIT License

  •44 forks•55 stars•1717 issues•00 pull requests•Updated Aug 4, 2026Aug 4, 2026

• sc_qsm

  Public
  Processing spinal cord meGRE data for Quantitative Susceptibility Mapping!

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• awesome-spine-mri

  Public
  Awesome list about open-source spine MRI dataset.

  Creative Commons Zero v1.0 Universal

  •00 forks•55 stars•44 issues•00 pull requests•Updated Jul 20, 2026Jul 20, 2026

• neuropoly-db

  Public
  Python

  •11 fork•11 star•88 issues•00 pull requests•Updated Jul 7, 2026Jul 7, 2026

• dcm2bids-auto

  Public
  Automatic identification of BIDS fields based on DICOM metadata

  MIT License

  •00 forks•11 star•33 issues•00 pull requests•Updated Jun 12, 2026Jun 12, 2026

• Susceptibility-Separation-Phantom

  Public
  This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

  MATLAB

  •

  MIT License

  •11 fork•1212 stars•22 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• BrainGrowthPrediction

  Public
  Pipeline to predict pediatric 3D MRI scans in a longitudinal fashion

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• modular_optuna_ml

  Public
  Modular framework for automating large-scale permutations of Optuna ML studies

  Python

  •00 forks•33 stars•1717 issues•44 pull requests•Updated Mar 8, 2026Mar 8, 2026

• axonpacking

  Public
  MATLAB

  •

  MIT License

  •55 forks•88 stars•11 issue•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• data-management

  Public
  Repo that deals with datalad aspects for internal use

  Python

  •00 forks•44 stars•146146 issues•22 pull requests•Updated Jan 14, 2026Jan 14, 2026

• bibeasy

  Public
  Set of tools to manage academic bibliography

  Python

  •

  Apache License 2.0

  •00 forks•22 stars•1717 issues•11 pull request•Updated Dec 18, 2025Dec 18, 2025

• synthetic-pediatric

  Public
  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2025Sep 30, 2025

• Flux-SynthSeg-Evaluation

  Public
  Host for interactive figures of a poster presented at the 2025 Flux Conference

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 6, 2025Sep 6, 2025

• slicercart

  Public
  Python

  •

  MIT License

  •22 forks•66 stars•8989 issues•33 pull requests•Updated Aug 8, 2025Aug 8, 2025

• BMPD

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2025Jul 22, 2025

• ansible-lint

  Public
  ansible-lint checks playbooks for practices and behavior that could potentially be improved and can fix some of the most common ones for you

  Python

  •

  GNU General Public License v3.0

  •754754 forks•00 stars•00 issues•00 pull requests•Updated Jun 12, 2025Jun 12, 2025

• gitea

  Public
  https://gitea.io fork with https://git-annex.branchable.com support

  Go

  •

  MIT License

  •7.1k7.1k forks•44 stars•2222 issues•88 pull requests•Updated Jun 2, 2025Jun 2, 2025

• sct_timings

  Public
  Repository for automated, standardized time measurements of SCT scripts.

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 22, 2025May 22, 2025

• infant-longitudinal-registration

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2025Apr 30, 2025

• distriploy

  Public
  Release & deployment helper

  Python

  •

  MIT License

  •00 forks•22 stars•55 issues•11 pull request•Updated Jan 9, 2025Jan 9, 2025

• coil-qa

  Public
  Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

  Python

  •

  MIT License

  •00 forks•11 star•44 issues•00 pull requests•Updated Nov 28, 2024Nov 28, 2024

• cortical-surface64mT

  Public
  Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

  Shell

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 20, 2024Nov 20, 2024