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@paninski-lab Liam Paninski's Lab at Columbia University

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    20 repositories

    • beast

      Public
      Behavioral analysis via self-supervised pretraining of transformers
      Python
      •
      MIT License
      •11•28•4•0•Updated Aug 31, 2026Aug 31, 2026

    • lightning-pose

      Public
      Accelerated 2D and 3D pose estimation using semi-supervised learning
      behavior-analysispose-estimationpytorch-lightning
      behavior-analysispose-estimationpytorch-lightning
      Python
      •
      MIT License
      •55•319•5•3•Updated Aug 31, 2026Aug 31, 2026

    • lightning-pose-app

      Public
      User interface for Lightning Pose
      TypeScript
      •
      MIT License
      •2•5•13•0•Updated Aug 27, 2026Aug 27, 2026

    • lp3d-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •1•2•4•0•Updated Aug 17, 2026Aug 17, 2026

    • mouse-pose

      Public
      Unified pose estimation model for mice trained across heterogeneous datasets
      Python
      •
      MIT License
      •1•1•0•0•Updated Aug 17, 2026Aug 17, 2026

    • lightning-action

      Public
      Animal action segmentation toolbox
      Python
      •
      MIT License
      •1•8•0•0•Updated Aug 3, 2026Aug 3, 2026

    • eks

      Public
      Ensembling and kalman smoothing for pose estimation
      Python
      •
      MIT License
      •12•40•0•0•Updated Jul 22, 2026Jul 22, 2026

    • lightning-pose-test-fixtures

      Public
      MIT License
      •0•0•0•0•Updated Jun 29, 2026Jun 29, 2026

    • beast-test-fixtures

      Public
      MIT License
      •0•0•1•0•Updated Jun 3, 2026Jun 3, 2026

    • eks-test-fixtures

      Public
      MIT License
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • betta-pipeline

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • lightning-pose-statics

      Public
      Github pages repo for small static file hosting
      HTML
      •0•0•0•0•Updated Jan 13, 2026Jan 13, 2026

    • keypoint-pseudo-labeler

      Public
      Use EKS as a pseudo-labeler to accelerate pose estimation projects
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Oct 28, 2024Oct 28, 2024

    • tracking-diagnostics

      Public
      A collection of tools for assessing the performance of pose estimation algorithms
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•8•1•0•Updated May 3, 2024May 3, 2024

    • deepgraphpose

      Public
      DeepGraphPose
      keypoint-trackingkeypoint-detectionanimal-pose-estimation
      keypoint-trackingkeypoint-detectionanimal-pose-estimation
      Python
      •
      GNU Lesser General Public License v3.0
      •11•32•10•8•Updated Nov 27, 2022Nov 27, 2022

    • yass

      Public
      YASS: Yet Another Spike Sorter
      pythoncomputational-neurosciencespike-sorting
      pythoncomputational-neurosciencespike-sorting
      Python
      •
      Apache License 2.0
      •14•70•3•2•Updated Sep 29, 2022Sep 29, 2022

    • diptest

      Public
      Python/C implementation of Hartigan & Hartigan's dip test, based on Martin Maechler's R package
      C
      •16•0•0•0•Updated Aug 21, 2018Aug 21, 2018

    • funimag

      Public
      Compression, denoising and demixing of functional imaging recordings
      Python
      •
      MIT License
      •7•31•2•0•Updated Jul 11, 2018Jul 11, 2018

    • yass-examples

      Public
      YASS Examples
      pythoncomputational-neurosciencespike-sorting
      pythoncomputational-neurosciencespike-sorting
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•0•0•Updated Jun 28, 2018Jun 28, 2018

    • yass-experimental

      Public
      Personal experimental work
      0•0•0•0•Updated Mar 1, 2018Mar 1, 2018
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