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@pinskylab Global Change Research Group

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    74 repositories

    • Atlantic_croaker_range

      Public
      Data and code for the genomic analysis of Atlantic croaker (Micropogonias undulatus) and incorporation of genomic data into range projections of the species.
      Shell
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Aug 24, 2026Aug 24, 2026

    • drmr

      Public
      An R package for dynamic range (or process-based species distribution) models. This is an ongoing project, and we do not recommend using the package for serious…
      R
      •
      GNU General Public License v3.0
      •0•0•5•2•Updated Jul 14, 2026Jul 14, 2026

    • Atenuis_Philippines

      Public
      Code for publication Contrasting patterns of seascape genetics in Acropora cf. tenuis and their symbiotic algae
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 12, 2026Jul 12, 2026

    • how_we_work

      Public
      Group resources and operating procedures
      HTML
      •
      Creative Commons Attribution 4.0 International
      •8•15•5•1•Updated May 26, 2026May 26, 2026

    • drmr_paper

      Public
      Code to reproduce the `drmr` paper analyses.
      R
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • kelpEVOL_fq_gz_processing

      Public
      Pre-Processing PIRE Data
      Shell
      •
      MIT License
      •2•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • db_web_framework

      Public
      MySQL web app interface
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • Philippines_PSMCs

      Public
      Identifying shared patterns of historical demography across Philippine fishes using Pairwise Sequentially Markovian Coalescent (PSMC) analyses
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • Sibling-Dispersal

      Public
      sibling dispersal patterns of clark's anemone fish
      Jupyter Notebook
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • git-demo

      Public
      0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • metaKelp

      Public
      HTML
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • climate_community_crossrealm

      Public
      Comparisons of community responses to temperature change across realms
      R
      •
      MIT License
      •0•2•0•0•Updated Dec 3, 2024Dec 3, 2024

    • logger_remote_temps

      Public
      Comparison of in situ temperature logger data to remote sensed temperatures on coral reefs, author Jaelyn Bos
      Python
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • CamotesROMS

      Public
      Project comparing observed larval dispersal against oceanographic mmodels for the Camotes Sea, Philippines.
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • globalFishGenetics

      Public
      Global marine patterns of fish genetic diversity
      R
      •
      MIT License
      •0•1•0•0•Updated May 6, 2024May 6, 2024

    • field

      Public
      Scripts used in the field for the Clownfish project to import and double check data
      HTML
      •1•1•5•1•Updated Mar 8, 2024Mar 8, 2024

    • Phils_GIS_R

      Public
      Clownfish map making, from scripts to QGIS files
      R
      •0•1•0•0•Updated Mar 8, 2024Mar 8, 2024

    • dynamic_range_model

      Public
      dynamic range models and forecast methods
      Jupyter Notebook
      •0•2•10•0•Updated Mar 6, 2024Mar 6, 2024

    • SRA-submission

      Public
      Michelle's repo to keep track of how to submit to the sequencing read archive aka short read archive
      HTML
      •2•2•1•0•Updated Dec 5, 2023Dec 5, 2023

    • life_history_genetic_diversity

      Public
      R
      •0•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • bsb-shift-drivers

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • laboratory

      Public
      wet lab protocols including sequencing library preparation
      HTML
      •2•2•0•0•Updated Oct 19, 2023Oct 19, 2023

    • lab-manual

      Public
      Fay Lab Manual / how we work
      TeX
      •
      Creative Commons Attribution 4.0 International
      •73•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • DispersalVariation

      Public
      HTML
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • ClownfishGWAS

      Public
      Katrina Catalano's data and code for project investigating associations between larval traits and genotypes from Expressed Exome Capture Sequencing in Amphiprio…
      Jupyter Notebook
      •0•0•0•0•Updated Jul 12, 2023Jul 12, 2023

    • RyanBatt_Trawl

      Public
      R
      •0•0•0•0•Updated Jul 12, 2023Jul 12, 2023

    • OceanAdapt

      Public
      Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions
      HTML
      •
      MIT License
      •7•15•39•0•Updated Jul 1, 2023Jul 1, 2023

    • arg_coral_reefs

      Public
      Code to accompany Pinsky et al. 2023 Coral Reef Population Genomics in an Age of Global Change. Annual Review of Genetics
      genomicsgeneticsselection
      genomicsgeneticsselectionpopulationdriftcoralhybridizationdispersal
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • A_clarkii_transcriptomics

      Public
      scripts, data, and plots for Amphiprion clarkii transcriptomics project
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 20, 2023Jun 20, 2023

    • ebs_dissimilarity_time_sensitivity

      Public
      Exploration of the effects of spatial and temporal scale on biotic homogenization using the Eastern Bering Sea as a test case. Zoë Kitchel dissertation chapter.
      R
      •1•0•0•0•Updated May 30, 2023May 30, 2023
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