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1. axonpath axonpath Public

   PyTorch/MONAI training code for the AxonPath segmentation models: myelinated fibres, inner cylinders and axons in electron microscopy and brightfield images. Models are exported in BioImage.IO for…

   Python

2. qupath-extension-axonpath qupath-extension-axonpath Public

   QuPath extension for deep learning segmentation and morphometry of myelinated nerve fibres in EM and brightfield images

   Java

3. qupath-daily qupath-daily Public

   A collection of Groovy scripts I use in QuPath for daily analysis tasks

   Groovy 1

4. incucyte-fiji-tools incucyte-fiji-tools Public

   A set of Fiji scripts to generate image stacks from Incucyte live-cell imaging data and apply XY drift correction across time points

   Groovy