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45 lines (40 loc) · 1.82 KB
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#!/bin/bash
design_name='circuits_signaling_1_layer'
bio_knowledge='pbk_circuit_hsa_sig.txt'
stratified_split=10
activation='relu'
optimizer='Adam'
epochs=100 #100
batch_size=10 #10
date
echo "RepeatedStratifiedKFold"
############################################### PBMC EXPERIMENT ###############################################
# 1-LAYER SIGNALING
dataset_name='processed/exper_pbmc/pbmc_sw_log1p.pck'
stratified_repeat=50
nohup python paper2_figures_for_Review/00_experiment.py \
-design_name $design_name \
-dataset_name $dataset_name \
-bio_knowledge $bio_knowledge \
-stratified_split $stratified_split \
-stratified_repeat $stratified_repeat \
-activation $activation \
-optimizer $optimizer \
-epochs $epochs \
-batch_size $batch_size > paper2_figures_for_Review/nohup/experiment_pbmc.out 2> paper2_figures_for_Review/nohup/experiment_pbmc.err
############################################### PBMC EXPERIMENT ###############################################
############################################## IMMUNE EXPERIMENT ##############################################
# 1-LAYER SIGNALING
dataset_name='processed/exper_immune/immune_new.pck'
stratified_repeat=30
nohup python paper2_figures_for_Review/00_experiment.py \
-design_name $design_name \
-dataset_name $dataset_name \
-bio_knowledge $bio_knowledge \
-stratified_split $stratified_split \
-stratified_repeat $stratified_repeat \
-activation $activation \
-optimizer $optimizer \
-epochs $epochs \
-batch_size $batch_size > paper2_figures_for_Review/nohup/experiment_immune.out 2> paper2_figures_for_Review/nohup/experiment_immune.err &
############################################## IMMUNE EXPERIMENT ##############################################