GenomeChars.csv

Species_Code,Species,Individual,Best_Library,#_Scaffolds_Used_PSMC,Choosen_lib,Contigs,Largest_contig,Assembly_total_length,Genome_size,genScp_V,%_completeness,N50,L50,Ns_per_100_kbp,%_BUSCO_single_copy,Upper Limit,Lower Limit,Average Depth of Coverage ,Genomescope_Het,notes
Aur,Ambassis urotaenia,TBD,Library#3/contam/scaffolds,7427,Aur-C_scaffolds_3R_spades_contam_R1R2ORPH_noisolate,473635,431139,432363777,445000000,1,97.2,52465,2384,TBD,92.6,149.641,49.88033333,149.641,0.32,TBD
Adu,Atherinomorus duodecimalis,Adu-CHam_028_Ex1,Library#3/contam/scaffolds,6299,Adu-C_scaffolds_all_spades_contam_R1R2ORPH_noisolate,97091,149411,793118697,947000000,1,83.8,9801,23011,397.91,52.6,,,,0.58,TBD
Cha,Corythoichthys haematopterus,TBD,allLibs/contam/scaffolds,658,scaffolds_results-SPAdes_allLibs_contam_R1R2_noIsolate,87399,552058,465127131,342000000,?,136.0020851,5207,27175,48.94,23,140.4562,23.40936667,70.2281,NA,TBD
Goy,Gerres oyena,Goy-CPas_088_Ex1,Library#2/contam/scaffolds,8340,GyC0881E,24249,397418,531155459,533000000,2,99.7,37754,3908,XX,80.2,111.0396,18.5066,55.5198,0.887649,TBD
Hmi,Halichoeres miniatus,Hmi-TBD,Library#2/contam/scaffolds,3777,scaffolds_HmC0451B_contam_R1R2_21-99_isolateoff-covoff,200054,1106460,511188068,632000000,2,86.2,10051,13877,TBD,61.5,169.687,28.28116667,84.8435,1.234,TBD
Hqu,Herklotsichthys quadrimaculatus,TBD,allLibs/contam/scaffolds,2674,allLibs,65871,195361,512737304,"457,000,000",1,112.1963466,9155,15571,TBD,48.8,228,38,113.915,2.05,TBD
Hte,Hypoatherina temminckii,Hte-CTic_070,Library#3/contam/scaffolds,7427,Hte-C_scaffolds_1R_spades_contam_R1R2ORPH_noisolate,8503,811863,428823787,442000000,1,97,106379,1146,3.13,95,28.88,4.813333333,14.144,1.27,TBD
Ele,Equulites leuciscus,TBD,TBD,TBD,Lle-C_scaffolds_3NR_spades_contam_R1R2ORPH_noisolate_covcutoff-off,34402,233831,490876564,524000000,1,93.7,23599,5583,3.56,75.5,,,,1.1,TBD
Lva,Lethrinus variegatus,TBD,allLibs/decontam/scaffolds,14506,Lva-CPnd-C  ,58626,200252,899066362,901000000,2,99.8,22598,11820,169.71,73.4,162.5662,27.09436667,81.2831,0.628,TBD
Och,Ostorhinchus chrysopomus,TBD,allLibs/decontam/scaffolds,11537,allLibs,75507,277781,878447116,635000000,2,138.3381285,16447,14525,195.13,68.96,163,27,81.4625,0.743,TBD
Par,Periophthalmus argentilineatus,TBD,Library#1/contam/???,6299,,TBD,TBD,TBD,581000000,2,TBD,TBD,TBD,TBD,TBD,280,47,139.867,1.363,TBD
Pli,Plotosus lineatus,TBD,allLibs/contam/scaffolds,3881,Pli-C_scaffolds_results-SPAdes_contam_R1R2_noIsolate,125095,1070312,960099166,737856920,2,130.12,8957,34066,0,37.9,TBD,TBD,TBD,0.736,TBD
Ppa,Pomacentrus pavo,TBD,Ppa-CPnd-B/contam/scaffolds,10978,Ppa-CPnd-B,50256,396078,778765731,748000000,2,1.041130656,25611,7864,15.77,68,TBD,TBD,TBD,1.2007,TBD
Sfa,Salarias fasciatus,TBD,SfC0282A/contam/scaffolds,7488,Sfa-C_scaffolds_results-SPAdes_SfC0282A_contam_R1R2_noIsolate,46311,221552,635000000,555041474,2,87.41,18095,8177,892.51,71.2,TBD,TBD,TBD,1.09,TBD
Ssp,Siganus spinus,Ssp-CGub_063_Ex3,3NR/contam/scaffolds,6667,Sob-C_scaffolds_3NR_spades_contam_R1R2ORPH_noisolate_covcutoff-off,15807,577437,379811542,TBD,TBD,42.69,56806,2341,2.54,TBD,TBD,TBD,TBD,0.71,TBD
Sne,Sphaeramia nematoptera,TBD,allLibs/decontam/scaffolds,6105,allLibs,99297,155721,817890798,965000000,2,84.7,10060,22244,TBD,58,TBD,TBD,TBD,0.647,TBD
Sgr,Spratelloides gracilis,Sgr-CMvi_007_Ex1,SgC0072C/contam/scaffolds,1413,Sgr-CMvi_007_Ex1 Sgr-C_scaffolds_spades_contam_R1R2_noisolate_covcutoff-off,85997,105644,536156621,854000000,2,62.8,6686,24304,14.73,38.4,260,43,129.629,1.343,TBD
Sin,Stethojulis interrupta,TBD,,5110,Sin_scaffolds_CPndA_decontam,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,162,27,81.1342,2.265,TBD
Tbi,Taeniamia biguttata,TBD,32R/contam/scaffolds,5393,Ssp-C_scaffolds_32R_spades_contam_R1R2ORPH_noisolate_covcutoff-off,89964,107921,689596427,TBD,TBD,39.13,8935,22696,8.13,TBD,TBD,TBD,TBD,0.64,TBD
Tka,Taeniamia kagoshimanus,TBD,500NR/contam/???,7311,Tbi-C_scaffolds_500_spades_contam_R1R2ORPH_noisolate_covcutoff-off,80419,240432,770808586,TBD,TBD,39.08,12396,17307,2.81,TBD,TBD,TBD,TBD,0.53,TBD
Tzo,Taeniamia zosterophora,TBD,TzC0402G/contam/scaffolds,11215,Tzo-C_scaffolds_results-SPAdes_TzC0402G_contam_R1R2_noIsolate,63527,252063,834945222,817758761,2,89.88,19682,11491,6.05,67.6,106,10,52.9004,0.922,decontambest?
Ako,Ambassis kopsii,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,TBD,0.52,TBD