Simplify input data selector

[mzueva]

This PR depends on platforma-open/3d-structure-prediction#19. The upstream prediction block does not emit subset anymore and liabilities block now should use plain dataset selector instead.

Greptile Summary

This PR simplifies the input data selector for the 3D Structure-Based Liabilities block by replacing the subset-column filter with filter: () => false, reflecting an upstream change where the prediction block no longer emits subset columns (predictionSuccessful / confident). It also bumps several @platforma-sdk/* and @milaboratories/* dependencies.

• model/src/index.ts: Replaces the two-column subset filter (predictionSuccessful | confident) with filter: () => false. The PDB map is now pre-filtered for confidence upstream, so the dataset is selected directly; the explicit false filter prevents unrelated isSubset columns from other blocks (e.g. Lead Selection) from appearing.
• workflow/src/main.tpl.tengo: Comment-only update noting that the subset filter is no longer resolved; functional workflow logic is unchanged.
• pnpm-workspace.yaml / pnpm-lock.yaml: Dependency version bumps across @platforma-sdk and @milaboratories packages, including a major-version bump for @platforma-sdk/workflow-tengo (5.25.0 → 6.5.0).

Confidence Score: 5/5

Safe to merge; the functional change is a single well-understood predicate swap consistent with the upstream PR removing subset emission.

The only functional change is replacing a two-column subset filter with filter: () => false in the dataset options builder. The intent is clearly stated in the inline comment, the workflow logic is untouched, and the dependency bumps align consistently across the workspace catalog and lock file.

No files require special attention. The @platforma-sdk/workflow-tengo jump from 5.x to 6.x is the largest version delta, but the workflow API surface used here appears unchanged.

Important Files Changed

Filename	Overview
model/src/index.ts	Replaces old subset-column filter with filter: () => false; change is well-commented, intentional, and correctly prevents unrelated isSubset columns from attaching to the selector.
workflow/src/main.tpl.tengo	Comment-only change noting the removal of the subset filter; all functional workflow logic is unchanged.
pnpm-workspace.yaml	Catalog version bumps for platforma-sdk and milaboratories packages; consistent with the lock file.
pnpm-lock.yaml	Lock file regenerated to reflect catalog bumps; versions align with workspace catalog entries.

Sequence Diagram

sequenceDiagram
    participant U as User
    participant M as Model (index.ts)
    participant RP as Result Pool
    participant WF as Workflow (main.tpl.tengo)

    Note over M,RP: Before this PR
    U->>M: Select dataset
    M->>RP: buildDatasetOptions (primary: pdb anchor)
    RP-->>M: PDB columns + subset columns (predictionSuccessful / confident)
    M-->>U: Show dataset + subset filter options
    U->>M: Pick dataset + subset

    Note over M,RP: After this PR
    U->>M: Select dataset
    M->>RP: buildDatasetOptions (primary: pdb anchor, filter: false)
    RP-->>M: PDB columns only (no subset columns surfaced)
    M-->>U: Show dataset selector (no subset options)
    U->>M: Pick dataset directly

    M->>WF: primaryRef (PDB column)
    WF->>WF: Anchor on PDB column (already confident-only upstream)
    WF-->>M: scoresData, pdbsMap, detectedMode

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_{Reviews (1): Last reviewed commit: "Simplify input data selector" | Re-trigger Greptile}

[gemini-code-assist]

Code Review

This pull request updates several dependencies across the project and simplifies the PDB map configuration by removing the optional clonotype subset filter, as the PDB map is already confident-only. No review comments were provided for this pull request.

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