Merge pull request #213 from platforma-open/MILAB-6871_mixcr-scratch-space

MILAB-6871: size analyze scratch space from the sample's reads

Author: DenKoren

.changeset/analyze-scratch-space-request.md

@@ -0,0 +1,13 @@
+---
+"@platforma-open/milaboratories.mixcr-clonotyping-2": minor
+"@platforma-open/milaboratories.mixcr-clonotyping-2.workflow": minor
+---
+
+Analyze asks the backend for disposable disk space sized from the sample's reads, so
+its temporary files no longer land in the working directory on shared storage.
+
+This reduces single sample computation bill by ~25-40% on large samples, where
+EFS I/O cost starts to be comparable or larger than cost of compute itself.
+
+To have an effect, you need backend version 4.4.1 or above.
+On older backends this optimisation is just ignored and computations run as usual.

pnpm-lock.yaml

@@ -9,7 +9,7 @@ packages:
 catalog:
   "@milaboratories/ts-builder": 1.7.0
   "@milaboratories/ts-configs": 1.4.0
-  "@platforma-sdk/workflow-tengo": 6.8.2
+  "@platforma-sdk/workflow-tengo": 6.9.0
   "@platforma-sdk/model": 1.82.0
   "@platforma-sdk/ui-vue": 1.82.1
   "@platforma-sdk/tengo-builder": 4.0.23
@@ -21,6 +21,7 @@ catalog:
   "@milaboratories/helpers": 1.14.5
 
   "@platforma-open/milaboratories.software-mixcr": 4.7.0-347-develop
+  "@platforma-open/milaboratories.software-binary-collection": 1.0.12
   "vue": 3.5.24
 
   "zod": ~3.25.76

pnpm-workspace.yaml

@@ -12,6 +12,7 @@
     "test": "pl-tengo test && vitest run --passWithNoTests"
   },
   "dependencies": {
+    "@platforma-open/milaboratories.software-binary-collection": "catalog:",
     "@platforma-open/milaboratories.software-mixcr": "catalog:",
     "@platforma-sdk/workflow-tengo": "catalog:"
   },