Auto-generated changes

Author: zen-weaver-of-integration[bot]

.changeset/migrate-to-structurer.md

@@ -1,8 +1,5 @@
 //registry.npmjs.org/:always-auth=true
 //registry.npmjs.org/:_authToken=${NPMJS_TOKEN}
 @milaboratories:registry=https://registry.npmjs.org/
-@platforma-open:registry=https://registry.npmjs.org/
 @platforma-sdk:registry=https://registry.npmjs.org/
-//npm.pkg.github.com/:always-auth=true
-//npm.pkg.github.com/:_authToken=${NODE_AUTH_TOKEN}
-@milaboratory:registry=https://npm.pkg.github.com/
+@platforma-open:registry=https://registry.npmjs.org/

.changeset/read-declared-modality.md

@@ -1,5 +1,52 @@
 ## 1.0.0
 
+## 1.6.0
+
+### Minor Changes
+
+- 849d8eb: Migrate onto the structurer and upgrade the SDK
+
+  The block now follows the canonical `block-tools structure` layout on
+  block-tools 2.14.3, with the SDK bumped to model/ui-vue 1.83.x, workflow-tengo
+  6.8.3, tengo-builder 4.0.23 and test 1.83.2.
+
+  Two changes are visible outside the block:
+
+  - **A new `kind` component** declares the block's identity and its init-params
+    contract. `BlockParams` is `{ inputAnchor?: PlRef }`, so a project template
+    can seed a new instance with the dataset to analyse. Every other field in the
+    block's data is view state and still defaults.
+  - **`block` is now a slim facade.** It publishes with no dependencies, bundles
+    the whole block into `dist/` plus `block-pack/`, and exports
+    `SequencePropertiesBlockPointer` for consumers that add the block from code.
+
+  `@platforma-sdk/ui-vue` is on 1.83.3, which publishes the component
+  declaration files its own type entry re-exports again — 1.83.1 had dropped
+  them and broke the facade build.
+
+- c340cab: Read the input's declared `pl7.app/modality` instead of guessing from the run-id key
+
+  `synthetic-repertoire-profiler` runs one pipeline over both antibody/TCR parents and designed
+  libraries, and everything it emits sits on the modality-neutral `pl7.app/variantKey` axis. It
+  keeps the same `pl7.app/repertoire/extractionRunId` key in both cases, so a VDJ run used to be
+  read as amplicon and scanned as one whole sequence — its FR1–FR4 regions, CDR3 included, were
+  never used.
+
+  The profiler now declares which kind of repertoire it produced in the entity-axis domain, and
+  this block reads that declaration: `vdj` takes the per-region antibody/TCR path, `amplicon` the
+  whole-sequence path. A VDJ run therefore gets CDR3 charge and hydrophobicity, and full-chain
+  properties, the same as MiXCR input does.
+
+  Datasets with no declaration keep the previous behaviour exactly, so projects made before the
+  declaration landed are unaffected.
+
+  Two smaller things follow from it. A declared VDJ input carries no receptor — the profiler has
+  none to emit, since germline auto-detect builds its reference from the user's own parent
+  sequences — so the "receptor not detected" notice no longer tells those users to pick a MiXCR
+  preset they never used; it says the labels defaulted to the antibody convention and that only
+  labels are affected. And modality detection moved into its own workflow module so it could be
+  unit-tested; `pnpm test` on the workflow package now runs those tests.
+
 ## 1.5.2
 
 ### Patch Changes

.npmrc

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.sequence-properties",
-  "version": "1.5.2",
+  "version": "1.6.0",
   "files": [
     "dist",
     "block-pack"

block/CHANGELOG.md

@@ -1,5 +1,29 @@
 # @platforma-open/MiLaboratories.sequence-properties.model
 
+## 1.4.0
+
+### Minor Changes
+
+- 849d8eb: Migrate onto the structurer and upgrade the SDK
+
+  The block now follows the canonical `block-tools structure` layout on
+  block-tools 2.14.3, with the SDK bumped to model/ui-vue 1.83.x, workflow-tengo
+  6.8.3, tengo-builder 4.0.23 and test 1.83.2.
+
+  Two changes are visible outside the block:
+
+  - **A new `kind` component** declares the block's identity and its init-params
+    contract. `BlockParams` is `{ inputAnchor?: PlRef }`, so a project template
+    can seed a new instance with the dataset to analyse. Every other field in the
+    block's data is view state and still defaults.
+  - **`block` is now a slim facade.** It publishes with no dependencies, bundles
+    the whole block into `dist/` plus `block-pack/`, and exports
+    `SequencePropertiesBlockPointer` for consumers that add the block from code.
+
+  `@platforma-sdk/ui-vue` is on 1.83.3, which publishes the component
+  declaration files its own type entry re-exports again — 1.83.1 had dropped
+  them and broke the facade build.
+
 ## 1.3.2
 
 ### Patch Changes

block/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.sequence-properties.model",
-  "version": "1.3.2",
+  "version": "1.4.0",
   "private": true,
   "description": "Block model",
   "type": "module",

model/CHANGELOG.md

@@ -1,5 +1,29 @@
 # @platforma-open/MiLaboratories.sequence-properties.software
 
+## 1.2.2
+
+### Patch Changes
+
+- 849d8eb: Migrate onto the structurer and upgrade the SDK
+
+  The block now follows the canonical `block-tools structure` layout on
+  block-tools 2.14.3, with the SDK bumped to model/ui-vue 1.83.x, workflow-tengo
+  6.8.3, tengo-builder 4.0.23 and test 1.83.2.
+
+  Two changes are visible outside the block:
+
+  - **A new `kind` component** declares the block's identity and its init-params
+    contract. `BlockParams` is `{ inputAnchor?: PlRef }`, so a project template
+    can seed a new instance with the dataset to analyse. Every other field in the
+    block's data is view state and still defaults.
+  - **`block` is now a slim facade.** It publishes with no dependencies, bundles
+    the whole block into `dist/` plus `block-pack/`, and exports
+    `SequencePropertiesBlockPointer` for consumers that add the block from code.
+
+  `@platforma-sdk/ui-vue` is on 1.83.3, which publishes the component
+  declaration files its own type entry re-exports again — 1.83.1 had dropped
+  them and broke the facade build.
+
 ## 1.2.1
 
 ### Patch Changes

model/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.sequence-properties.software",
-  "version": "1.2.1",
+  "version": "1.2.2",
   "description": "Block Software",
   "files": [
     "./dist/**/*"

software/CHANGELOG.md

@@ -1,5 +1,12 @@
 # @platforma-open/MiLaboratories.sequence-properties.test
 
+## 1.1.11
+
+### Patch Changes
+
+- Updated dependencies [849d8eb]
+  - @platforma-open/milaboratories.sequence-properties.model@1.4.0
+
 ## 1.1.10
 
 ### Patch Changes