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@populationgenomics

Centre for Population Genomics

Popular repositories Loading

  1. talos talos Public

    Rare Disease variant reanalysis tool

    Python 83 22

  2. production-pipelines production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    Python 12 2

  3. ClinvArbitration ClinvArbitration Public

    A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the CPG

    Python 11 3

  4. saige-tenk10k saige-tenk10k Public

    Hail batch pipeline to run SAIGE on CPG's GCP

    Python 10 1

  5. cpg-cost-control cpg-cost-control Public

    A Cloud Function to handle GCP billing budget notifications.

    Python 6 3

  6. cpg-infrastructure cpg-infrastructure Public

    This repository is used to manage the infrastructure at the CPG

    Python 6 1

Repositories

Showing 10 of 122 repositories
  • cpg-flow-relatedness Public

    Central workflow for all cross-omic QC workflows

    populationgenomics/cpg-flow-relatedness's past year of commit activity
    Python 0 MIT 0 0 1 Updated Sep 16, 2026
  • cpg-infrastructure Public

    This repository is used to manage the infrastructure at the CPG

    populationgenomics/cpg-infrastructure's past year of commit activity
    Python 6 MIT 1 4 7 Updated Sep 16, 2026
  • themis Public

    Themis — agentic rare-disease curation platform

    populationgenomics/themis's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2026
  • sv-workflows Public

    Structural Variation Workflows

    populationgenomics/sv-workflows's past year of commit activity
    Python 2 MIT 1 2 4 Updated Sep 15, 2026
  • popgen-genotyping Public

    A pipeline to process genotyping microarray data using CPG Flow

    populationgenomics/popgen-genotyping's past year of commit activity
    Python 0 MIT 0 2 1 Updated Sep 15, 2026
  • hail Public Forked from hail-is/hail

    Scalable genomic data analysis.

    populationgenomics/hail's past year of commit activity
    Python 1 MIT 268 3 2 Updated Sep 15, 2026
  • references Public

    Reference data for bioinformatics workflows

    populationgenomics/references's past year of commit activity
    Python 2 MIT 2 4 3 Updated Sep 15, 2026
  • populationgenomics/analysis-runner's past year of commit activity
    Python 2 MIT 5 7 (1 issue needs help) 7 Updated Sep 15, 2026
  • cpg-flow Public

    CPG Pipeline Python API

    populationgenomics/cpg-flow's past year of commit activity
    Python 0 MIT 0 7 8 Updated Sep 15, 2026
  • populationgenomics/seqera-trial-tmp's past year of commit activity
    Python 0 0 0 0 Updated Sep 14, 2026

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