Conversation
This generally aligns more closely with seqera cli's `tw launch` than with existing analysis-runner conventions. https://docs.seqera.io/platform-cli/reference/launch Though there is some analysis-runner logic applied - or at least scaffolded to be applied in the server side implementation. - Rather than specifying compute env and workspace, you specify dataset and access level, and the server will look up the compute env and workspace from those. - Overriding of config with local config is disallowed for access levels other than test. This is because some config fields could be used to execute arbitrary code on the workflow runner. For access levels standard/full, a config can be specified but it must abide by the same rules as the workflow itself, ie. being on the main branch of an allow-listed repository. - Several other `tw launch` args are omitted as we don't have a clear use case yet, they can be added later if needed.
dancoates
force-pushed
the
SET-1313-analysis-runner-seqera-cli
branch
from
September 18, 2026 06:49
efd650c to
1e7473e
Compare
dancoates
marked this pull request as draft
September 18, 2026 06:50
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This generally aligns more closely with seqera cli's
tw launchthan with existing analysis-runner conventions.https://docs.seqera.io/platform-cli/reference/launch
Though there is some analysis-runner logic applied - or at least scaffolded to be applied in the server side implementation.
tw launchargs are omitted as we don't have a clear use case yet, they can be added later if needed.