Add seqr non-preemptible pools - #243
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lgruen
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Nov 13, 2022
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| -- Adds dedicated pools for the seqr loading pipeline, with the 'seqr' pool label, but non-preemptible versions | |||
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You could potentially add these changes simply to add-seqr-pools.sql, as we haven't integrated that with CI anyhow.
I.e. regarding your question of reproducibility: ideally we'd add all our "CPG"-custom pools in here (including the large-cohorts one, so we should probably rename this to add-cpg-pools.sql or similar) and add another build step in build.yaml, so these pools also get created for dev deployments, for example. I was hoping to do that once the upstream merge had been done, but that ended up taking way longer (in fact has just been recently merged!).
Co-authored-by: Leonhard Gruenschloss <leonhard.gruenschloss@populationgenomics.org.au>
lgruen
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Jan 19, 2023
lgruen
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@violetbrina Would you like to take a stab at the integration outlined in #243 (comment)?
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Not sure if that would work, but just a guess.
Seems like it's a bit verbose to add a pool, but I guess we aren't going to add many new pools. Hail upstream seem to be satisfied with this solution as well
By the way, how the
large-cohortpools were added? Do you have sql commands for that locally? Did you mean to addadd-seqr-pools.sqljust as an example, and we shouldn't add more sql files intobatch/sql? We probably still should store sqls somewhere for repdocubility