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- Status: Open.#1263 In populationgenomics/production-pipelines;
- Status: Open.#1258 In populationgenomics/production-pipelines;
- Status: Open.#1211 In populationgenomics/production-pipelines;
GATK-SV missing TrainGCNV Stage?
rare diseaseChange is exclusively within the scope of the rare disease pipelineChange is exclusively within the scope of the rare disease pipelineStatus: Open.#1206 In populationgenomics/production-pipelines;Add VQSR headers into AnnotateCohort
bugSomething isn't workingSomething isn't workingenhancementNew feature or requestNew feature or requestrare diseaseChange is exclusively within the scope of the rare disease pipelineChange is exclusively within the scope of the rare disease pipelineStatus: Open.#1162 In populationgenomics/production-pipelines;Add gnomAD v4.1 to the seqr_loader/combiner pipeline
enhancementNew feature or requestNew feature or requestrare diseaseChange is exclusively within the scope of the rare disease pipelineChange is exclusively within the scope of the rare disease pipelineStatus: Open.#1161 In populationgenomics/production-pipelines;Need a check early in the Combiner pipeline to make sure whole sample set is in the combined callset
rare diseaseChange is exclusively within the scope of the rare disease pipelineChange is exclusively within the scope of the rare disease pipelineStatus: Open.#1149 In populationgenomics/production-pipelines;Combiner... squashing
rare diseaseChange is exclusively within the scope of the rare disease pipelineChange is exclusively within the scope of the rare disease pipelineStatus: Open.#1135 In populationgenomics/production-pipelines;- Status: Open.#1121 In populationgenomics/production-pipelines;
Make Hail dry-run functionality more accessible
enhancementNew feature or requestNew feature or requestsharedThe change impacts both the LC and RD pipeline.The change impacts both the LC and RD pipeline.Status: Open.#1117 In populationgenomics/production-pipelines;Validate sequencing groups in cohort
enhancementNew feature or requestNew feature or requestsharedThe change impacts both the LC and RD pipeline.The change impacts both the LC and RD pipeline.Status: Open.#1103 In populationgenomics/production-pipelines;AR-GUID is not shared with QOB jobs
rare diseaseChange is exclusively within the scope of the rare disease pipelineChange is exclusively within the scope of the rare disease pipelineStatus: Open.#1075 In populationgenomics/production-pipelines;