Ancestry no dp gcta testing - #915
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michael-harper wants to merge 140 commits into
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michael-harper wants to merge 140 commits into
michael-harper wants to merge 140 commits into
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…mics/production-pipelines into relatedness_no_dp
…s provide the path in the config file with a '/' at the end e.g. 'gs://cpg-hgdp-test/vds/v1-0.vds/' that would otherwise break the .endswith() check
…eBackground, that densifies the background dataset. Also changing the inputs to stage AncestryAddBackground to pick up from this stage and use the background dataset(s) as inputs to it's function. Some toying with CLI arguments was necessary to get access to densified background datasets and their paths
…y of outputs as well as individual .bed .bim and .bam files to hopefully trigger existence detection for when stage is being asked to run when output exists. Also fixing gcta_pca parameters
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