data.yaml

# this is the current release epoch (i.e. 20XX.REL)
released_epoch: "2026.7"
# this is the current dev cycle epoch (i.e. 20XX.REL+1)
active_epoch: "2026.10"
# this is the next dev cycle epoch (i.e. 20XX.REL+2)
next_epoch: "2027.1"
# qiime2 distro (formerly amplicon) renamed for rachis release 2026.4
distros: [tiny, qiime2, moshpit, pathogenome, test]
# primary_distro refers to the distribution used to run ci-dev for each plugin
packages:

# moshpit proxy package
- name: moshpit
  repo: bokulich-lab/MOSHPIT
  distros: [moshpit]
  primary_distro: moshpit

- name: q2-alignment
  repo: qiime2/q2-alignment
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-amrfinderplus
  repo: bokulich-lab/q2-amrfinderplus
  distros: [pathogenome]
  primary_distro: pathogenome

# formerly q2-moshpit
- name: q2-annotate
  repo: bokulich-lab/q2-annotate
  distros: [moshpit]
  primary_distro: moshpit

- name: q2-assembly
  repo: bokulich-lab/q2-assembly
  distros: [moshpit]
  primary_distro: moshpit

- name: q2-boots
  repo: qiime2/q2-boots
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-composition
  repo: qiime2/q2-composition
  distros: [qiime2, test]
  primary_distro: qiime2

- name: q2-cutadapt
  repo: qiime2/q2-cutadapt
  distros: [qiime2, moshpit]
  primary_distro: qiime2

- name: q2-dada2
  repo: qiime2/q2-dada2
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-deblur
  repo: qiime2/q2-deblur
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-demux
  repo: qiime2/q2-demux
  distros: [qiime2, moshpit, pathogenome]
  primary_distro: qiime2

- name: q2-diversity-lib
  repo: qiime2/q2-diversity-lib
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-diversity
  repo: qiime2/q2-diversity
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-emperor
  repo: qiime2/q2-emperor
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-fastp
  repo: bokulich-lab/q2-fastp
  distros: [qiime2, moshpit]
  primary_distro: qiime2

- name: q2-feature-classifier
  repo: qiime2/q2-feature-classifier
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-feature-table
  repo: qiime2/q2-feature-table
  distros: [qiime2, moshpit, pathogenome]
  primary_distro: qiime2

- name: q2-fondue
  repo: bokulich-lab/q2-fondue
  distros: [qiime2, moshpit, test]
  primary_distro: moshpit

- name: q2-fragment-insertion
  repo: qiime2/q2-fragment-insertion
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-kmerizer
  repo: bokulich-lab/q2-kmerizer
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-longitudinal
  repo: qiime2/q2-longitudinal
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-mag
  repo: bokulich-lab/q2-mag
  distros: [moshpit]
  primary_distro: moshpit

- name: q2-metadata
  repo: qiime2/q2-metadata
  distros: [tiny, qiime2, moshpit, pathogenome]
  primary_distro: tiny

- name: q2-mystery-stew
  repo: qiime2/q2-mystery-stew
  distros: [tiny, qiime2, moshpit, pathogenome]
  primary_distro: tiny

- name: q2-phylogeny
  repo: qiime2/q2-phylogeny
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-quality-control
  repo: qiime2/q2-quality-control
  distros: [qiime2, moshpit]
  primary_distro: qiime2

- name: q2-quality-filter
  repo: qiime2/q2-quality-filter
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-rgi
  repo: bokulich-lab/q2-rgi
  distros: [pathogenome]
  primary_distro: pathogenome

- name: q2-sample-classifier
  repo: qiime2/q2-sample-classifier
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-sapienns
  repo: caporaso-lab/q2-sapienns
  distros: [moshpit]
  primary_distro: moshpit

- name: q2-sourmash
  repo: dib-lab/q2-sourmash
  distros: [moshpit]
  primary_distro: moshpit

- name: q2-stats
  repo: qiime2/q2-stats
  distros: [qiime2]
  primary_distro: qiime2

- name: q2-taxa
  repo: qiime2/q2-taxa
  distros: [qiime2, moshpit]
  primary_distro: qiime2

- name: q2-types
  repo: qiime2/q2-types
  distros: [tiny, qiime2, moshpit, pathogenome, test]
  primary_distro: tiny

- name: q2-viromics
  repo: bokulich-lab/q2-viromics
  distros: [pathogenome]
  primary_distro: pathogenome

- name: q2-vizard
  repo: qiime2/q2-vizard
  distros: [qiime2, moshpit, pathogenome]
  primary_distro: qiime2

- name: q2-vsearch
  repo: qiime2/q2-vsearch
  distros: [qiime2]
  primary_distro: qiime2

# removing from tiny for a proof of concept package replacement
# will handle the other env files after tiny builds successfully using
# the new rachis-cli package name
# - name: q2cli
#   repo: qiime2/q2cli
#   distros: [qiime2, moshpit, pathogenome, test]
#   primary_distro: qiime2

- name: q2templates
  repo: qiime2/q2templates
  distros: [tiny, qiime2, moshpit, pathogenome, test]
  primary_distro: tiny

# qiime2 proxy package
# note: this repo does not use lib-ci-dev.yaml (custom nox/uv-based CI with no
# `distro:` concept), so primary_distro is intentionally omitted.
# Paired ci-dev discovery treats a missing primary_distro on a sibling as:
# skip the sibling.primary_distro containment check
# else: fall back to self.primary_distro in sibling.distros
- name: qiime2
  repo: qiime2/q2
  distros: [tiny, qiime2, moshpit, pathogenome, test]

# formerly qiime2
# note: this repo does not use lib-ci-dev.yaml (custom nox/uv-based CI with no
# `distro:` concept), so primary_distro is intentionally omitted.
# See note on the `qiime2` proxy package above.
- name: rachis
  repo: rachis-org/rachis
  distros: [tiny, qiime2, moshpit, pathogenome, test]

# adding this as a 'duplicate' while the name change is still in progress
# no conflicting builds will happen bc this wont be added to any env files
# just adding here now for Paired- testing purposes
- name: rachis-cli
  repo: rachis-org/rachis-cli
  distros: [tiny, qiime2, moshpit, pathogenome, test]
  primary_distro: tiny

- name: rescript
  repo: bokulich-lab/RESCRIPt
  distros: [qiime2, moshpit]
  primary_distro: qiime2