Issues

• NEW: UsageAPI expansion to include annotation, report generation, and provenance replay

  rachis-org/rachis#975 · Filter by author gregcaporaso opened on Oct 3, 2026
  1

• Create a Mechanism for Not Recording Some Provenance in Pipelines

  rachis-org/rachis#963 · Filter by author Oddant1 opened on Aug 6, 2026
  

• Create more parsl configs for testing the API for changes

  rachis-org/rachis#940 · Filter by author ebolyen opened on Jun 4, 2026
  

• prov-replay does not work on reports

  rachis-org/rachis#930 · Filter by author cherman2 opened on Apr 30, 2026
  1

  

• Chore: update Pandas to work with 3.0 and handle the deprecations in INSDC metadata handling

  rachis-org/rachis#905 · Filter by author ebolyen opened on Feb 4, 2026
  7

• Permissions on artifacts created in the cache do not respect the user group

  rachis-org/rachis#896 · Filter by author misialq opened on Jan 12, 2026
  2

  

• TEST: Add testing for non-current archive formats

  rachis-org/rachis#893 · Filter by author colinvwood opened on Jan 8, 2026
  1

  

• IMP: Adding annotations should be possible directly in the cache

  annotations
  rachis-org/rachis#887 · Filter by author misialq opened on Dec 5, 2025
  

• Support alternative recycle behavior with usage examples

  rachis-org/rachis#882 · Filter by author ebolyen opened on Nov 5, 2025
  2

  

• add support for parallel execution/documentation of usage examples

  rachis-org/rachis#794 · Filter by author gregcaporaso opened on Aug 22, 2024

• Handling of qiime2 reference data in Galaxy

  rachis-org/rachis#758 · Filter by author bernt-matthias opened on Mar 14, 2024
  3

• imp: adds action for depreciated_alias parameter

  cottonwood
  rachis-org/rachis#662 · Filter by author lizgehret opened on Nov 3, 2022

• Handle pickling manual registration of plugins in PluginManager

  rachis-org/rachis#647 · Filter by author ebolyen opened on Sep 21, 2022

• Allow Usage.action to identify output types more flexibly.

  rachis-org/rachis#621 · Filter by author ChrisKeefe opened on Feb 19, 2022
  3

• Pipeline nodes don't know about their underlying node's citations

  rachis-org/rachis#619 · Filter by author ChrisKeefe opened on Feb 8, 2022
  1

• decode_parameters fails with metadata column parameter

  rachis-org/rachis#600 · Filter by author johnchase opened on Sep 13, 2021
  2

• Add filenames or filepahts to provenance

  rachis-org/rachis#596 · Filter by author antgonza opened on Aug 11, 2021
  3

• TestPluginBase.get_data_path should prevent use of ../

  rachis-org/rachis#579 · Filter by author thermokarst opened on Apr 7, 2021

• Add save or save_to_dir method to Results

  rachis-org/rachis#567 · Filter by author ElDeveloper opened on Mar 17, 2021

• BUG: parse_type('Range(-1)') fails; also does not normalize unions

  rachis-org/rachis#563 · Filter by author ebolyen opened on Feb 12, 2021

• Idea: add a public render method to Usage Drivers

  rachis-org/rachis#562 · Filter by author thermokarst opened on Feb 12, 2021
  2

• Improve Error Message When Default Param Value is Wrong Type

  rachis-org/rachis#559 · Filter by author Oddant1 opened on Feb 1, 2021

• Semantic Type & Format docstrings

  diff:2|intermediatelang:pythonscope:1|several-projectssrc:selftype:analysistype:new-feature
  rachis-org/rachis#558 · Filter by author thermokarst opened on Jan 11, 2021

• Allow the registration of new axes/metadata IDs (such as Strain)

  rachis-org/rachis#554 · Filter by author ebolyen opened on Nov 20, 2020
  4

• Metadata.load requires high memory with metadata-like entities containing many rows

  rachis-org/rachis#552 · Filter by author wasade opened on Nov 10, 2020