.gitignore

__pycache__/
*.py[cod]
*.egg-info/
.eggs/
dist/
build/
.env
docker-compose.override.yml
.venv/
.venv2/
venv/
*.pkl
.ipynb_checkpoints/
.DS_Store
.pytest_cache/
.mypy_cache/
.ruff_cache/
data/processed/*
!data/processed/.gitkeep
data/uploads/*
!data/uploads/.gitkeep
reports/*.png
reports/runs/
reports/events.jsonl
reports/clinical_audit.jsonl

# --- Agentic AI / local coding assistants (never publish) ---
.vscode/
.cursor/
.claude/
.aider*
.continue/
.windsurf/
.codeium/
.agent/
.agents/
AGENTS.md
CLAUDE.md
*.plan.md
.cursor-*.md
agent-transcripts/
**/.cursor/

# Local-only scratch (never push)
implimentation/
implementation_private/

*niw*
*NIW*
*petition*
*uscis*
docs/ieee*
docs/*paper_draft*
docs/study_protocol*
docs/study_protocol_*.md
**/recommendation_letter*

# Angular
web/node_modules/
web/dist/
web/.angular/

# Local-only academic writing (not part of software repo)
book/
research-paper/
research_paper/