awesome-virome/index.html at main · shandley/awesome-virome · GitHub

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<!DOCTYPE html>
<html lang="en">
<head>
    <meta charset="UTF-8">
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
    <meta http-equiv="Cache-Control" content="no-cache, no-store, must-revalidate">
    <meta http-equiv="Pragma" content="no-cache">
    <meta http-equiv="Expires" content="0">
    <title>Awesome-Virome - Curated Viral Analysis Tools</title>
    <meta name="description" content="A comprehensive, curated database of 244 software tools for virome analysis">
    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap@5.3.2/dist/css/bootstrap.min.css">
    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap-icons@1.11.1/font/bootstrap-icons.css">
    <style>
        :root {
            /* Modern virology-themed color palette */
            --primary-color: #109b81;
            --primary-light: #6FC3BA;
            --primary-dark: #097362;
            --secondary-color: #2C4B7C;
            --secondary-light: #557EBF;
            --secondary-dark: #193152;
            --accent-color: #9D5EB0;
            --accent-light: #C89AD3;
            --accent-dark: #6A3877;
            --light-bg: #f8f9fa;
            --dark-bg: #1E293B;
            --card-bg: #ffffff;
            --card-shadow: 0 4px 6px rgba(0, 0, 0, 0.05);
            --card-shadow-hover: 0 8px 15px rgba(0, 0, 0, 0.1);
            --transition-speed: 0.3s;
            --border-radius: 12px;
            --nav-height: 4rem;
        }

        body {
            min-height: 100vh;
            background-color: var(--light-bg);
            color: #333;
            font-family: 'Inter', system-ui, -apple-system, sans-serif;
            padding-top: var(--nav-height);
        }

        /* Navbar */
        .navbar {
            background-color: var(--secondary-color);
            box-shadow: 0 2px 10px rgba(0, 0, 0, 0.1);
            height: var(--nav-height);
            z-index: 1030;
        }

        .navbar-brand {
            font-weight: 700;
            color: white !important;
            font-size: 1.5rem;
        }

        .navbar-brand span {
            color: var(--primary-light);
        }

        .nav-link {
            color: rgba(255, 255, 255, 0.9) !important;
            font-weight: 500;
            transition: color var(--transition-speed);
            padding: 0.5rem 1rem;
        }

        .nav-link:hover {
            color: #ffffff !important;
        }

        /* Hero Section */
        .hero {
            background: linear-gradient(135deg, var(--secondary-dark) 0%, var(--secondary-color) 50%, var(--primary-dark) 100%);
            color: white;
            padding: 5rem 0;
            text-align: center;
            position: relative;
            overflow: hidden;
        }

        .hero::before {
            content: '';
            position: absolute;
            top: 0;
            left: 0;
            right: 0;
            bottom: 0;
            background-image: url('awesome-virome-hex.png');
            background-size: 200px;
            background-position: center;
            background-repeat: no-repeat;
            opacity: 0.1;
            pointer-events: none;
        }

        .hero h1 {
            font-size: 3.5rem;
            font-weight: 800;
            margin-bottom: 1.5rem;
            text-shadow: 2px 2px 4px rgba(0, 0, 0, 0.3);
        }

        .hero .lead {
            font-size: 1.4rem;
            margin-bottom: 2rem;
            opacity: 0.95;
        }

        .hero-stats {
            display: flex;
            justify-content: center;
            gap: 3rem;
            margin: 3rem 0 2rem;
            flex-wrap: wrap;
        }

        .stat-item {
            text-align: center;
        }

        .stat-number {
            font-size: 3rem;
            font-weight: 800;
            color: var(--primary-light);
            line-height: 1;
        }

        .stat-label {
            font-size: 1rem;
            opacity: 0.9;
            margin-top: 0.5rem;
        }

        /* Tool Cards */
        .tool-card {
            background: var(--card-bg);
            border-radius: var(--border-radius);
            padding: 2rem;
            box-shadow: var(--card-shadow);
            transition: all var(--transition-speed);
            height: 100%;
            border: none;
            text-decoration: none;
            display: block;
            color: inherit;
        }

        .tool-card:hover {
            box-shadow: var(--card-shadow-hover);
            transform: translateY(-5px);
            text-decoration: none;
            color: inherit;
        }

        .tool-icon {
            font-size: 3rem;
            color: var(--primary-color);
            margin-bottom: 1rem;
        }

        .tool-card h3 {
            color: var(--secondary-color);
            font-weight: 700;
            margin-bottom: 1rem;
            font-size: 1.5rem;
        }

        .tool-card p {
            color: #666;
            margin-bottom: 1rem;
            line-height: 1.6;
        }

        .tool-card ul {
            list-style: none;
            padding: 0;
            margin: 0;
        }

        .tool-card li {
            padding: 0.5rem 0;
            color: #666;
            font-size: 0.95rem;
        }

        .tool-card li i {
            color: var(--primary-color);
            margin-right: 0.5rem;
        }

        .btn-hero {
            padding: 0.875rem 2rem;
            font-size: 1.1rem;
            font-weight: 600;
            border-radius: 8px;
            transition: all var(--transition-speed);
        }

        .btn-primary-custom {
            background-color: var(--primary-color);
            border-color: var(--primary-color);
            color: white;
        }

        .btn-primary-custom:hover {
            background-color: var(--primary-dark);
            border-color: var(--primary-dark);
            transform: translateY(-2px);
            box-shadow: 0 4px 12px rgba(16, 155, 129, 0.3);
        }

        .btn-outline-custom {
            border: 2px solid white;
            color: white;
        }

        .btn-outline-custom:hover {
            background-color: white;
            color: var(--secondary-color);
        }

        /* Features Section */
        .features-section {
            padding: 4rem 0;
            background-color: white;
        }

        .feature-item {
            text-align: center;
            padding: 2rem;
        }

        .feature-icon {
            font-size: 2.5rem;
            color: var(--accent-color);
            margin-bottom: 1rem;
        }

        .feature-item h4 {
            color: var(--secondary-color);
            font-weight: 600;
            margin-bottom: 1rem;
        }

        .feature-item p {
            color: #666;
            line-height: 1.6;
        }

        /* CTA Section */
        .cta-section {
            background: linear-gradient(135deg, var(--accent-color) 0%, var(--accent-dark) 100%);
            color: white;
            padding: 4rem 0;
            text-align: center;
        }

        .cta-section h2 {
            font-size: 2.5rem;
            font-weight: 700;
            margin-bottom: 1.5rem;
        }

        .cta-section p {
            font-size: 1.2rem;
            margin-bottom: 2rem;
            opacity: 0.95;
        }

        /* Footer */
        .footer {
            background-color: var(--secondary-dark);
            color: rgba(255, 255, 255, 0.8);
            padding: 2rem 0;
            text-align: center;
        }

        .footer a {
            color: var(--primary-light);
            text-decoration: none;
        }

        .footer a:hover {
            color: white;
        }

        /* Responsive */
        @media (max-width: 768px) {
            .hero h1 {
                font-size: 2.5rem;
            }

            .hero .lead {
                font-size: 1.1rem;
            }

            .stat-number {
                font-size: 2rem;
            }

            .hero-stats {
                gap: 1.5rem;
            }
        }
    </style>
</head>
<body>
    <!-- Navbar -->
    <nav class="navbar navbar-expand-lg navbar-dark fixed-top">
        <div class="container">
            <a class="navbar-brand" href="index.html">Awesome-<span>Virome</span></a>
            <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarNav">
                <span class="navbar-toggler-icon"></span>
            </button>
            <div class="collapse navbar-collapse" id="navbarNav">
                <ul class="navbar-nav ms-auto">
                    <li class="nav-item">
                        <a class="nav-link" href="dashboard.html">Dashboard</a>
                    </li>
                    <li class="nav-item">
                        <a class="nav-link" href="comparison.html">Comparison</a>
                    </li>
                    <li class="nav-item">
                        <a class="nav-link" href="selection-guide.html">Selection Guide</a>
                    </li>
                    <li class="nav-item">
                        <a class="nav-link" href="https://github.com/shandley/awesome-virome">
                            <i class="bi bi-github"></i> GitHub
                        </a>
                    </li>
                </ul>
            </div>
        </div>
    </nav>

    <!-- Hero Section -->
    <section class="hero">
        <div class="container">
            <h1>Awesome-Virome</h1>
            <p class="lead">A comprehensive, curated database of software tools for virome analysis</p>

            <div class="hero-stats">
                <div class="stat-item">
                    <div class="stat-number">244</div>
                    <div class="stat-label">Curated Tools</div>
                </div>
                <div class="stat-item">
                    <div class="stat-number">8</div>
                    <div class="stat-label">Major Categories</div>
                </div>
                <div class="stat-item">
                    <div class="stat-number">164</div>
                    <div class="stat-label">Active Repositories</div>
                </div>
            </div>

            <div class="mt-4">
                <a href="dashboard.html" class="btn btn-primary-custom btn-hero me-3">
                    <i class="bi bi-bar-chart-fill me-2"></i>Explore Dashboard
                </a>
                <a href="https://github.com/shandley/awesome-virome/blob/main/README.md" class="btn btn-outline-custom btn-hero">
                    <i class="bi bi-book me-2"></i>Browse Tools
                </a>
            </div>
        </div>
    </section>

    <!-- Interactive Tools Section -->
    <section class="py-5">
        <div class="container">
            <div class="text-center mb-5">
                <h2 class="display-5 fw-bold mb-3" style="color: var(--secondary-color);">Explore Interactively</h2>
                <p class="lead text-muted">Discover and compare viral analysis tools with our interactive web applications</p>
            </div>

            <div class="row g-4">
                <div class="col-md-4">
                    <a href="dashboard.html" class="tool-card">
                        <div class="tool-icon">
                            <i class="bi bi-graph-up-arrow"></i>
                        </div>
                        <h3>Interactive Dashboard</h3>
                        <p>Visualize the entire virome analysis ecosystem at a glance</p>
                        <ul>
                            <li><i class="bi bi-check-circle-fill"></i>Tool categorization treemap</li>
                            <li><i class="bi bi-check-circle-fill"></i>Interactive network graph</li>
                            <li><i class="bi bi-check-circle-fill"></i>Timeline visualization</li>
                            <li><i class="bi bi-check-circle-fill"></i>Technology trends analysis</li>
                        </ul>
                    </a>
                </div>

                <div class="col-md-4">
                    <a href="comparison.html" class="tool-card">
                        <div class="tool-icon">
                            <i class="bi bi-columns-gap"></i>
                        </div>
                        <h3>Tool Comparison</h3>
                        <p>Compare tools side-by-side to find the perfect fit for your workflow</p>
                        <ul>
                            <li><i class="bi bi-check-circle-fill"></i>Multi-tool comparison</li>
                            <li><i class="bi bi-check-circle-fill"></i>Advanced filtering options</li>
                            <li><i class="bi bi-check-circle-fill"></i>Smart sorting capabilities</li>
                            <li><i class="bi bi-check-circle-fill"></i>Export to CSV/JSON</li>
                        </ul>
                    </a>
                </div>

                <div class="col-md-4">
                    <a href="selection-guide.html" class="tool-card">
                        <div class="tool-icon">
                            <i class="bi bi-compass"></i>
                        </div>
                        <h3>Selection Guide</h3>
                        <p>Get personalized recommendations through our interactive decision tree</p>
                        <ul>
                            <li><i class="bi bi-check-circle-fill"></i>Simple questionnaire</li>
                            <li><i class="bi bi-check-circle-fill"></i>Guided pathways</li>
                            <li><i class="bi bi-check-circle-fill"></i>Tailored recommendations</li>
                            <li><i class="bi bi-check-circle-fill"></i>Feature explanations</li>
                        </ul>
                    </a>
                </div>
            </div>
        </div>
    </section>

    <!-- Features Section -->
    <section class="features-section">
        <div class="container">
            <div class="text-center mb-5">
                <h2 class="display-5 fw-bold mb-3" style="color: var(--secondary-color);">Why Awesome-Virome?</h2>
            </div>

            <div class="row g-4">
                <div class="col-md-3">
                    <div class="feature-item">
                        <div class="feature-icon">
                            <i class="bi bi-award"></i>
                        </div>
                        <h4>Curated & Quality-Checked</h4>
                        <p>Every tool is carefully reviewed and categorized by viral bioinformatics experts</p>
                    </div>
                </div>

                <div class="col-md-3">
                    <div class="feature-item">
                        <div class="feature-icon">
                            <i class="bi bi-arrow-repeat"></i>
                        </div>
                        <h4>Regularly Updated</h4>
                        <p>Weekly automated updates ensure tool metadata stays current and accurate</p>
                    </div>
                </div>

                <div class="col-md-3">
                    <div class="feature-item">
                        <div class="feature-icon">
                            <i class="bi bi-code-square"></i>
                        </div>
                        <h4>API Access</h4>
                        <p>RESTful API for programmatic access to the entire database</p>
                    </div>
                </div>

                <div class="col-md-3">
                    <div class="feature-item">
                        <div class="feature-icon">
                            <i class="bi bi-people"></i>
                        </div>
                        <h4>Community-Driven</h4>
                        <p>Open to contributions from researchers worldwide through GitHub</p>
                    </div>
                </div>
            </div>
        </div>
    </section>

    <!-- Call to Action -->
    <section class="cta-section">
        <div class="container">
            <h2>Ready to Start Your Virome Analysis?</h2>
            <p>Explore 244 tools, compare options, and find the perfect fit for your research</p>
            <div class="mt-4">
                <a href="dashboard.html" class="btn btn-light btn-lg me-3">
                    <i class="bi bi-bar-chart-fill me-2"></i>Launch Dashboard
                </a>
                <a href="https://github.com/shandley/awesome-virome" class="btn btn-outline-light btn-lg">
                    <i class="bi bi-github me-2"></i>View on GitHub
                </a>
            </div>
        </div>
    </section>

    <!-- Footer -->
    <footer class="footer">
        <div class="container">
            <p class="mb-2">
                <strong>Awesome-Virome</strong> - A curated database of viral analysis tools
            </p>
            <p class="mb-0">
                Maintained by <a href="https://github.com/shandley">Scott Handley</a> and contributors |
                Licensed under <a href="https://github.com/shandley/awesome-virome/blob/main/LICENSE">MIT</a>
            </p>
        </div>
    </footer>

    <script src="https://cdn.jsdelivr.net/npm/bootstrap@5.3.2/dist/js/bootstrap.bundle.min.js"></script>
</body>
</html>