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GitHub Repositories by Stars

Auto-generated file. This list is written by update_check.py (repo root) each time it runs, so do not hand-edit it; edits will be overwritten on the next run.

This snapshot predates the current generator. It uses a two-column Repository | Stars layout, but update_check.py now emits a three-column Repository | Category | Stars table. The next run will therefore also change the schema, not just the rows.

Known problems to fix in the generator: this snapshot contains duplicate rows (for example AlphaFold-Multimer, CovidMD, coronaSPAdes, and several others appear two or three times) and off-topic non-virome entries whose links point at unrelated repositories (for example the "AlphaFold-Multimer" row links to deepmind/alphafold and "CovidMD" links to lammps/lammps). The generator iterates the source tool list without deduplicating, so both issues trace to the source data and collection logic in update_check.py, not to this output file.

Repository Stars
AlphaFold-Multimer 13320
AlphaFold-Multimer 13320
CovidMD 2365
CovidMD 2365
BLAST+DIAMOND 1114
BLAST+DIAMOND 1114
coronaSPAdes 797
coronaSPAdes 797
coronaSPAdes/metaviralSPAdes 797
metaviralSPAdes 797
metaviralSPAdes 797
metaviralSPAdes-RNA 797
metaviralSPAdes-RNA 797
MetaProdigal 471
MetaProdigal 471
Prodigal 471
Prodigal 471
MetaPhlAn 4.1.0 328
MetaPhlAn 4.1.0 328
MetaPhlAn 4.1.0 328
AMRFinder 297
AMRFinder 297
DRAMv 267
DRAMv 267
DRAMv 267
geNomad 219
geNomad 219
geNomad 219
Viral-NGS 192
Viral-NGS 192
VIBRANT 159
VIBRANT 159
VIBRANT 159
Pharokka 158
Pharokka 158
Pharokka 158
VirFinder 137
V-pipe 135
VIRify 131
DeepVirFinder 128
DeepVirFinder-models 128
SNPGenie 111
What_the_phage 104
VirSorter 103
VirSorter-DarkMatter 103
Recentrifuge 88
IDseq 84
Phables 77
PhiSpy 77
PhiSpy 77
PHANOTATE 72
PHANOTATE-AMR 72
Phanotate 72
viralVerify 67
COBRA 65
ViralMSA 65
Phanta 63
vRhyme 61
Viral-Track 57
hecatomb 57
Cenote-Taker 2 55
MetaCerberus 55
MARVEL 53
WIsH 52
BERTax 51
VAPiD 51
Phigaro 50
PHAMB 48
PPR-Meta 43
ShoRAH 40
Cenote-Taker 3 39
FAVITES 38
Virion 38
PhageBoost 37
SpacePHARER 37
BACPHLIP 35
RdRp-scan 35
Virtus 34
INSaFLU-TELEVIR 33
ViraMiner-models 33
viraMiner 33
PastML 32
DBSCAN-SWA 31
PhaGCN 31
Seeker 31
VirHostMatcher 30
VirNet 30
VPF Tools 29
ViroProfiler 28
PHIST 27
VIPtree 27
ViruSpy 27
Jaeger 26
VIP 25
CHERRY 24
CHERRY-models 24
viralComplete 24
VStrains 23
ViralConsensus 22
CliqueSNV 21
DePhT 20
VIDHOP 20
DeepHost 19
HostG 19
PhANNs 19
VEGA 19
VirHostMatcher-Net 19
VirMine 18
VirMine-RNA 18
ViromeQC 18
virMiner 18
CoCoNet 17
GraViTy 17
pGlyco 17
viralintegration 17
CrisprOpenDB 16
PHACTS 16
PhageHostLearn 16
PlaqueSizeTool 16
ViralCC 16
Phage tools 15
Virtifier 15
HOPS 14
VirMet 14
mulitPHATE 14
OLGenie 13
VIGA 13
BacteriophageHostPrediction 12
hafeZ 12
viralMetagenomicsPipeline 12
PHP 11
Paleovirology 11
INHERIT 10
Prophet 10
ResFinder 10
DeepVHPPI 9
MetaPhinder 9
Virhunter 9
vAMPirus 9
FAVITES-Lite 7
HostPhinder 7
INFH-VH 7
Deep6 6
PHIAF 6
phaMers 6
HoloVir 5
Jovian 5
MaGplotR 5
PredPHI 5
VIPERA 5
PHPGCA 4
PhageTB 4
crassus 4
PIGv 3
PhagePromoter 3
SpikeHunter 3
Virus Host Predict 3
virAnnot 3
PB-LKS 2
pygenetic_code 2
PHERI 1
VCFgenie 1
VFM 1
VirusTaxo 1