@@ -146,6 +146,7 @@ tail -f ~/Library/Logs/mcpproxy/main.log  # main log (macOS; Linux: ~/.mcpproxy/
 - **Windows installer**: [docs/github-actions-windows-wix-research.md](docs/github-actions-windows-wix-research.md). **Prerelease** (`next` branch + `v*-rc.*` tags, opt-in, off stable channels): [docs/prerelease-builds.md](docs/prerelease-builds.md).
 
 ## Recent Changes
+- 101-tpa-db US3 + 087-tpa-daily-refresh (tpa-bundle-refresh): Go 1.26, Vue 3 Web UI — a refresh cycle (`internal/security/scanner/tpa_refresh.go`: file leg then optional fetch leg, jittered `tpa_refresh_interval` default 24h, single-flight joins, `Nudge` on `config.reloaded`, joined in `Runtime.Close`) feeds the same source-neutral `evaluateCandidate` pipeline; the opt-in fetch (`tpa_fetch_enabled` default off, `tpa_fetch_url` no compiled-in default, env `MCPPROXY_TPA_FETCH_ENABLED`; Releases-API `latest` or direct `<url>` + `<url>.sig`, signed-only via `evalEnv.MustSign`, https/loopback-only transport with dial-time egress checks, host-only logs, outcomes kept apart from `last_rejection`) works today only with operator-signed bundles (publisher key set still empty); the activation self-check (`tpa_selfcheck.go`, parity-tested port of the `cmd/scan-eval` gate, embedded `bundled/selfcheck-corpus.json`) refuses a candidate as `gate_failure`; fetched bundles survive reload/restart (`externalConfigured`) and disabling fetch keeps them serving; activation observers drive the cached-only re-protection sweep (`internal/server/scan_bundle_reprotect.go`, held-evidence leg + `Service.StartScanFromCachedContracts` gated by `auto_baseline_scan`, marker `storage.BundleReprotectState`, RT-02: never approves, unquarantines or revokes); `BundleInfo` gains `last_checked_at`, `last_activated_at`, `stale`, `refresh`, `reprotect`; surfaces `POST /api/v1/security/bundle/refresh`, `mcpproxy security bundle refresh`, `BundleDoctorWarnings`, telemetry schema 16 refresh counters. Docs: `docs/features/tpa-bundle-signing.md` "Daily refresh and optional fetch", `docs/features/security-quarantine.md` "Re-protection after a bundle activates". **No new dependencies.**
 - 101-tpa-db US1 (tpa-db-format): Go 1.26, Vue 3 Web UI — external TPA bundles are signed artifacts: `<bundle>.sig` four-key Ed25519 sidecar (`internal/security/bundlesig`, pure, contract `specs/101-tpa-db/contracts/sidecar-format.md`), verify-before-parse source-neutral `Candidate` pipeline (`scanner/tpa_candidate.go`, FR-008 order, ceilings 8 MiB / 2000 rules / 4 KiB / 5 s via `candidate_open_{unix,windows}.go` no-follow descriptor opens), per-authority (publisher/operator) epoch-scoped watermark + ratchet + pin/deny-list in BBolt `tpa_bundle_state` (one tx with the history row) and content-addressed LKG files `<datadir>/tpa-lkg/`, full-digest rollback, `coverageOK` + async scan-mode admission degrade on the four FR-007/009a/009b conditions. Config: `require_signed_bundle` (default off), `tpa_active_root`, `tpa_operator_signers`, `tpa_operator_baseline`, `tpa_operator_epoch`. Surfaces: `GET/POST /api/v1/security/bundle{,/history,/rollback,/unpin,/reload}`, `mcpproxy security bundle …`, `cmd/tpa-db keygen|sign|verify`, telemetry schema 15 bundle keys. Publisher key set ships EMPTY. Docs: `docs/features/tpa-bundle-signing.md`. **No new dependencies.**
 - 118-auto-rescan-on-change: Go 1.26, small Web UI change — after a tool definition changes (or a tool is added after the baseline) in `manual`/`scan` trust mode the in-process TPA scan of its current definition is recorded as hold evidence (`held_reason: awaiting_review` + `held_verdict: clean` for a clean verdict; findings/coverage as before) and a debounced informational server rescan (`scan_informational.go`, fed by `Runtime.AddToolDefinitionsChangedObserver`) brings the review scan line back to "current". Switch: `security.auto_rescan_on_change` (default on, env `MCPPROXY_AUTO_RESCAN_ON_CHANGE`) AND `auto_baseline_scan`. RT-02 untouched: a clean verdict never approves a change. Docs: `docs/features/security-quarantine.md` "Automatic informational baseline scan". **No new dependencies.**
 - quarantine-approval-pilot: Go 1.26, tests + CI only — independent policy model `internal/qapilot` (no production imports), deterministic scenario inventory S01–S26 + 896-cell dispatch table + REST authz table + counting-upstream dispatch check, check ledger (`QAPILOT_REPORT_DIR`) gated by `go run ./cmd/qapilot report`, versioned mutation set `tests/qapilot/mutations.json` run by `qapilot mutate` in disposable worktrees; workflow `.github/workflows/quarantine-pilot.yml` (3 PR checks + scheduled rapid exploration). Docs: `docs/development/quarantine-approval-pilot.md`. **No new dependencies.**
 
@@ -223,7 +223,7 @@ graph LR
 <details>
 <summary>🔵 tpa-db: versioned TPA signature database for the offline scanner — In progress · P1</summary>
 
-> Vision pillar 'feel protected': the deterministic detect engine (Spec 076/077) ships with built-in checks but no updatable knowledge of in-the-wild Tool Poisoning Attacks. Build a versioned, offline-first signature/pattern database (known TPA campaigns, malicious phrase corpora, IoC hashes) that the engine consumes — bundled with the binary, refreshable out-of-band, community-contributable, and guarded by the existing scan-eval recall/FP CI gate. SPEC STAGE: specs/101-tpa-db MERGED as PR #1028 on 2026-08-27 (kept in this note, not in pr:, because pr: is implementation evidence and a docs(specs) merge is not that); 2026-10-20: US1 (tpa-db-format: signed four-key Ed25519 sidecar, verify-before-parse loader, per-authority anti-downgrade state, full-digest rollback, coverage degrade) shipped as #1701; US2 corpus in a sibling session; US3 refresh waits on Spec 087.
+> Vision pillar 'feel protected': the deterministic detect engine (Spec 076/077) ships with built-in checks but no updatable knowledge of in-the-wild Tool Poisoning Attacks. Build a versioned, offline-first signature/pattern database (known TPA campaigns, malicious phrase corpora, IoC hashes) that the engine consumes — bundled with the binary, refreshable out-of-band, community-contributable, and guarded by the existing scan-eval recall/FP CI gate. SPEC STAGE: specs/101-tpa-db MERGED as PR #1028 on 2026-08-27 (kept in this note, not in pr:, because pr: is implementation evidence and a docs(specs) merge is not that); 2026-10-20: US1 (tpa-db-format: signed four-key Ed25519 sidecar, verify-before-parse loader, per-authority anti-downgrade state, full-digest rollback, coverage degrade) shipped as #1701; US2 corpus in a sibling session (#1702, open); 2026-10-22: US3 (tpa-db-refresh, implements Spec 087 US1+US2: daily file+optional signed fetch refresh, activation self-check, freshness surfaces, cached re-protection sweep) shipped as #1720. Epic stays in_progress until the corpus (US2) lands.
 
 Spec: [101-tpa-db](./specs/101-tpa-db/)
 
@@ -238,15 +238,15 @@ graph LR
 
   classDef done fill:#1f7a1f,stroke:#0d3d0d,color:#ffffff;
   classDef todo fill:#6e7781,stroke:#3d4248,color:#ffffff;
-  class tpa_db_format done;
-  class tpa_db_corpus,tpa_db_refresh todo;
+  class tpa_db_format,tpa_db_refresh done;
+  class tpa_db_corpus todo;
 ```
 
 | Task | Status | Refs |
 | --- | --- | --- |
 | Signature DB format + loader (versioned, signed, bundled default) | 🟢 Done | #1701 |
 | Seed corpus: catalog known public TPA campaigns/patterns into the DB | ⚪ Todo | — |
-| Out-of-band refresh (offline-friendly: manual file drop + optional fetch), eval-gated | ⚪ Todo | — |
+| Out-of-band refresh (offline-friendly: manual file drop + optional fetch), eval-gated | 🟢 Done | #1720 |
 
 </details>
 
@@ -1008,7 +1008,7 @@ graph LR
 | Web UI + macOS app UX audit | In progress | P0 | — |  |  |
 | Release qualification gate (auto-QA matrix blocks the tag) | In progress | P0 | 4/4 (100%) | [081-release-qa-gate](./specs/081-release-qa-gate/) |  |
 | Action log / transparency — info at a glance | In progress | P1 | — |  |  |
-| tpa-db: versioned TPA signature database for the offline scanner | In progress | P1 | 30/30 (100%) | [101-tpa-db](./specs/101-tpa-db/) |  |
+| tpa-db: versioned TPA signature database for the offline scanner | In progress | P1 | 81/81 (100%) | [101-tpa-db](./specs/101-tpa-db/) |  |
 | Token-efficiency benchmark: measured savings, published results | In progress | P1 | 62/64 (97%) | [103-token-bench](./specs/103-token-bench/) |  |
 | Telemetry identity & data quality (machine_id + CI-filter hardening) | In progress | P1 | — |  |  |
 | Telemetry v7: honest funnel + churn instrumentation | In progress | P1 | — | [080-telemetry-v7-churn](./specs/080-telemetry-v7-churn/) |  |
@@ -1158,7 +1158,7 @@ Legend: `shipped` ≥95% checked · `in-flight` 1–94% · `drafted` 0% · `—`
 | [098-tools-preflight](./specs/098-tools-preflight/) | `in-flight` | 28/33 (85%) |
 | [099-describe-check-mode](./specs/099-describe-check-mode/) | `in-flight` | 9/10 (90%) |
 | [100-prompt-rugpull-baseline](./specs/100-prompt-rugpull-baseline/) | — | — |
-| [101-tpa-db](./specs/101-tpa-db/) | `shipped` | 30/30 (100%) |
+| [101-tpa-db](./specs/101-tpa-db/) | `shipped` | 81/81 (100%) |
 | [102-schema-deferred](./specs/102-schema-deferred/) | `shipped` | 89/89 (100%) |
 | [103-token-bench](./specs/103-token-bench/) | `shipped` | 62/64 (97%) |
 | [104-auto-routing-mode](./specs/104-auto-routing-mode/) | — | — |
 
@@ -591,6 +591,16 @@ func outputDiagnosticsWithProfileChecks(diag map[string]interface{}, info map[st
 			fmt.Println("⚠️  Runtime Warnings")
 			fmt.Println("━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━")
 			for _, warningItem := range runtimeWarnings {
+				// The daemon's management Doctor emits free-text warnings as
+				// plain strings (config findings, audit counters, the
+				// signature-bundle freshness warnings); the legacy path emits
+				// structured objects. Both render here.
+				if warningText, ok := warningItem.(string); ok {
+					if warningText != "" {
+						fmt.Printf("  • %s\n", warningText)
+					}
+					continue
+				}
 				if warningMap, ok := warningItem.(map[string]interface{}); ok {
 					message := getStringField(warningMap, "message")
 					severity := getStringField(warningMap, "severity")
 
@@ -628,6 +628,46 @@ func TestOutputDiagnostics_WarningWithoutTitle(t *testing.T) {
 	}
 }
 
+// The daemon's management Doctor emits runtime_warnings as plain strings
+// (appData denial, config findings, audit counters and, from Spec 101 US3, the
+// signature-bundle freshness warnings registered via AddRuntimeWarningSource).
+// A string warning must render under "Runtime Warnings" and must suppress the
+// all-clear verdict; before this it was counted in total_issues but printed
+// nowhere.
+func TestOutputDiagnostics_StringRuntimeWarningRendersAndSuppressesAllClear(t *testing.T) {
+	const warning = "TPA signature bundle is 81 days old (stale after 30): run `mcpproxy security bundle refresh`"
+	diag := map[string]interface{}{
+		"total_issues":     1,
+		"runtime_warnings": []interface{}{warning},
+	}
+
+	oldStdout := os.Stdout
+	r, w, _ := os.Pipe()
+	os.Stdout = w
+	defer func() { os.Stdout = oldStdout }()
+
+	doctorOutput = "pretty"
+	err := outputDiagnostics(diag, nil, nil, "", nil)
+
+	w.Close()
+	var buf bytes.Buffer
+	buf.ReadFrom(r)
+	output := buf.String()
+
+	if err != nil {
+		t.Errorf("outputDiagnostics() returned error: %v", err)
+	}
+	if !strings.Contains(output, "Runtime Warnings") {
+		t.Error("Missing runtime warnings section header for a string warning")
+	}
+	if !strings.Contains(output, warning) {
+		t.Errorf("A plain-string runtime warning must be printed, got:\n%s", output)
+	}
+	if strings.Contains(output, "All systems operational") {
+		t.Error("A runtime warning must suppress the all-clear verdict")
+	}
+}
+
 func TestOutputDiagnostics_HighSeverityWarning(t *testing.T) {
 	diag := map[string]interface{}{
 		"total_issues": 1,