Issues

• v2.0.3: Overrepresented sequences and Adapter Content are graded PASS when FastQC's cutoffs give FAIL

  smithlabcode/falco#145 · Filter by author MaximilianStammnitz opened on Nov 2, 2026
  1

• Duplication and overrepresented sequences: count reads with IUPAC codes as written, as FastQC does

  smithlabcode/falco#144 · Filter by author hesamshahrokhi opened on Oct 31, 2026

• v2.0.3: reads that differ only in IUPAC ambiguity codes are counted as the same sequence

  smithlabcode/falco#141 · Filter by author hesamshahrokhi opened on Oct 13, 2026
  9

• Falco 2.0.3 crashes with ≥72 threads and strange --mem behavior

  smithlabcode/falco#133 · Filter by author Alexandra2022kzn opened on Sep 30, 2026
  9

• PacBIO CCS long reads?

  smithlabcode/falco#77 · Filter by author jianshu93 opened on Oct 24, 2024

• JSON Output

  enhancement
  smithlabcode/falco#21 · Filter by author oschwengers opened on Nov 10, 2021
  1

• Nanopore support

  bug
  smithlabcode/falco#14 · Filter by author arunvv90 opened on May 14, 2021
  3