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feat: add Chromatograms support for XcmsExperimentHdf5 #725

feat: add Chromatograms support for XcmsExperimentHdf5

feat: add Chromatograms support for XcmsExperimentHdf5 #725

Triggered via push July 28, 2026 07:43
Status Success
Total duration 1h 17m 34s
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check-bioc.yml

on: push
Matrix: build-check
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3 errors and 22 warnings
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (latest)
Process completed with exit code 1.
windows-latest (latest)
Process completed with exit code 1.
ubuntu-latest (devel)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, actions/checkout@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (latest)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, actions/checkout@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (latest)
Output for data("xdata", package = "xcms"):
macOS-latest (latest)
Output for data("xdata", package = "xcms"):
macOS-latest (latest)
SystemRequirements specified C++11: support has been removed
macOS-latest (latest)
SystemRequirements specified C++11: support has been removed
macOS-latest (latest)
'dold' may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (latest)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
macOS-latest (latest)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
windows-latest (latest)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, actions/checkout@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (latest)
See below...
windows-latest (latest)
Found the following significant warnings:
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'XVector'
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'SparseArray'
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'DelayedArray'
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'S4Arrays'
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'GenomicRanges'
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'Seqinfo'
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'SummarizedExperiment'
windows-latest (latest)
multiple methods tables found for 'transform'
windows-latest (latest)
replacing previous import 'BiocGenerics::transform' by 'S4Vectors::transform' when loading 'IRanges'
windows-latest (latest)
multiple methods tables found for 'transform'