admixture

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

Rapid population clustering with autoencoders

R package and web app for spatial visualisation of admixture on a projected map

Fast population genetics clustering.

Tutorial for visualising admixture on a map

Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis

Recomb-Mix: a local ancestry inference tool

Utilities for analyzing next generation sequencing data.

Repo to analyze population genetic data with many different methods

tips and tricks in genome-wide association studies - a tutorial

faster haplotype-based admixture inference and dating software

Tool to estimate purity of tumor samples exploiting DNA Methylation data

Combining phylogenetic networks and Random Forests for prediction of ancestry from multilocus genotype data

Diablo G25 - is a tool for conversion of VCF file to 23AndMe format and calculation of admixture scores from it.

Interactive interface for pophelper using shiny web framework.

This repository contains practical data analyses exercises for the special course on Paleogenomics and Anthropology held at the National School of Anthropology of Mexico (ENAH), May 6 to 10, 2019. Topics include performing QC on aDNA NGS data, assigning mtDNA haplogroups and testing hypotheses w/PCA and ADMIXTURE analyses. No previous command-li…

A data clustering package based on admixture ratios (Q matrix) of population structure analysis.

Julia wrapper of the ADMIXTURE program for estimating ancestry

haplotype-based admixture inference and dating software

Set of scripts used for the paper "A Neurodegenerative Disease Landscape of Rare Mutations in Colombia Due to Founder Effects"