aptamers

RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.

Implementation of SMART APtamer in Python

E2EDNA with OpenMM implementation = OpenDNA

Toolkit for the design of an RNA-switch, using aptamers.

End-to-end computational SELEX-NGS pipeline for RNA aptamer discovery, motif analysis, RNA structure prediction, and protein–RNA docking.

Multiple Objective Optimization work for optimizing aptamer binding to new targets done in collaboration with Chris Knight and Josh Knowles

BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

CAIS 표준에 기반한 의식 측정 바이오센서 글로벌 오픈 연구 공모전입니다. 압타머–요오드 산화환원(redox) 센싱을 통해 비임상적·객관적 의식 유사 신호 측정을 탐구합니다. 모든 규칙은 DOI 등록된 CAIS 기준으로 고정되며, 오픈소스 하드웨어(CC BY-SA 4.0)를 따릅니다.

A simple .exe GUI tool to create random Aptamer DNA sequences of specified length and GC content (Windows executable available)

ATLAS-MED: An open-source biophysics manifesto. A Layer-1 physical exploit against solid tumors using magnetic hyperthermia and electromagnetic routing.

Implementation of K-means that categorizes sequences into groups based on similarity score derived from Smith-Waterman algorithm.

Python library for aptamer design