atomic-force-microscopy

Scientific analysis of nanoscale materials imaging data

An AFM image analysis program to batch process data and obtain statistics from images

A library for loading various atomic force microscopy file formats.

GUI for AFM data analysis with an emphasis on biological specimens

Comparative Study of Deep Learning Algorithms for Atomic Force Microscope Image Denoising

Stm cluster heights resizer (stm-cluster-heightzer) is a class that finds peaks of clusters (high bumps) in a scanning tunneling microscope (STM) image(data) and if necessary corrects the heights of the individual clusters to the surrounding surface.

End-to-end differentiable blind tip reconstruction on Colab implemented with PyTorch

Object-oriented Scanning Probe Microscopy files

A model of high speed atomic force microscopy, based on density maps from IMP's Nuclear Pore Complex Transport module.

Toolset to load and manipulate SNOM/AFM data

Vector graphics based nanolithography tool for Asylum Research AFMs

Legacy MATLAB code from PhD dissertation work and academic postdoc work

Plugins to import AFM data in Blender

Atomic Force Microscopy Analysis Platform

Automated AFM morphology analysis with CNN classification, U-Net segmentation, Voronoi and ColorWheel pipelines, mask editing, batch processing, and reproducible validation.

Utilities for performing parallel and simultaneous lithography using an array of self-heating AFM cantilevers

Differentiable High-Speed AFM (HS-AFM) simulation for protein structures. JAX-powered toolkit for generating synthetic movies with realistic tip-dilation and scanning lag.

Software for controlling the temperature of a self-heating AFM cantilever

A tool for preprocessing, extracting, and identifying critical regions of interest in AFM protein sample data. The repository applies the Lennard-Jones Potential fit to analyze and model the interaction forces at the nanoscale, providing insights into protein structure and behavior.

This is the GitHub repository for AFMDAQ Visualizer, a project with the objective of acquiring and processing raw AFM data to plot variables of interest related to the type of microscopy.