🦠 List of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
Comparison of gene usage in immune repertoires under different biological conditions
[UNDER DEVELOPMENT] Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement sequences
MiXCR Clonotyping Block
analysis of antibody diversity, .wdl wrapper workflow
scRNA-seq for COVID-19 samples, with healthy controls.
Desktop pipeline for B-cell receptor repertoire analysis: germline assignment, clonal clustering, SHM and lineage reconstruction for human and mouse. Built as the research instrument for a master's thesis. Signed macOS builds on the releases page.
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