SimBA (Simple Behavioral Analysis): a pipeline and GUI for developing supervised behavioral classifiers from any major pose-estimation tool
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Oct 13, 2026 - Python
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behavioral-neuroscience
Here are 22 public repositories matching this topic...
Distributed behavioral experiments
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Feb 19, 2025 - Python
A device for measuring licking behaviour in rodents in real time
neuroscience science-research laboratory-equipment rodent-behaviors behavioral-neuroscience research-tools
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Jan 7, 2026 - Python
an ml model to classify behavior in East African cichlid fish
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Apr 19, 2024 - Python
GUI tool for computing 50% withdrawal thresholds from von Frey up-down data with publication-ready figures and statistical analysis
python gui statistics neuroscience data-visualization open-science scientific-computing preclinical research-software behavioral-neuroscience nociception pain-research von-frey up-down-method dixon-method mechanical-sensitivity allodynia withdrawal-threshold rodent-behavior
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Oct 6, 2026 - Python
deepLabCut-based computer vision pipeline for mouse eye tracking and optokinetic response (OKR) analysis.
python computer-vision deep-learning neuroscience pytorch scientific-computing eye-tracking deeplabcut behavioral-neuroscience
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Sep 25, 2026 - Python
A fork of idtracker.ai that takes animal outlines from a fine-tuned Detectron2 Mask R-CNN instead of intensity thresholding. Identity tracking unchanged. Unofficial; not affiliated with the de Polavieja Lab.
python computer-vision deep-learning animal-behavior instance-segmentation mask-rcnn animal-tracking detectron2 behavioral-neuroscience fish-tracking idtrackerai
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Oct 10, 2026 - Python
Desktop app converting idtracker.ai output folders into analysis-ready behavioural datasets — 33 cited metrics; request more via the issue form
desktop-app python tkinter data-analysis animal-behavior ethology animal-tracking behavioral-neuroscience fish-tracking idtrackerai
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Oct 13, 2026 - Python
Review of mathematical neuroscience topics for the UMN Neurosci prelim
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Jun 17, 2020 - Python
Streamlit tool to explore individual mouse behavior—occupancy, zone/pen transitions, circadian activity, food use, and cross-pen roaming—from RFID colony data.
python neuroscience mouse data-visualization rfid animal-behavior chronobiology ethology streamlit behavioral-neuroscience
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Jul 21, 2026 - Python
Unity package consuming OpenApparatus.Core to generate procedural navigation environments in Unity scenes.
procedural-generation unity virtual-reality reproducibility research-software upm-package behavioral-neuroscience
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May 19, 2026 - C#
Repository containing computational neuroscience notebooks for a project investigating whether biased stimulus exposure in one session influences mouse choices in the next, using International Brain Laboratory data. Developed during Neuromatch Academy 2026.
computational-neuroscience behavioral-neuroscience neuromatch-academy perceptual-decision-making international-brain-laboratory
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Oct 9, 2026 - Jupyter Notebook
Desktop app that turns OptoDrum visual acuity / contrast sensitivity staircase exports into one clean, analysis-ready CSV report (one row per animal).
desktop-app python neuroscience tkinter data-processing optomotor contrast-sensitivity behavioral-neuroscience visual-acuity
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Sep 13, 2026 - Python
Software MATLAB R2011a para control y registro de la caja conductual CMC/Valentia.
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Oct 4, 2026 - MATLAB
🔮 Cognitive Performance Engineering • Behavioral RPG • Progressive Web Architecture (Next.js 14, Tailwind Liquid Glass, Spring Boot 3, Java 21, Redis).
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Oct 1, 2026 - Java
Object-oriented, extensible behavioral testing framework for Odor Discrimination and multi-modal experiments. Features real-time Teensy/MATLAB integration and automated data logging.
matlab-gui behavioral-neuroscience teensy-arduino odor-discrimination real-time-data-acquisition automated-experiment
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Jul 19, 2026 - MATLAB
A no-code Windows GUI application for recording timestamped MP4 videos from Basler USB3 cameras using the pylon SDK. Built for behavioral neuroscience recordings (such as LUPE (PMID: 41501467)), with live preview, adjustable camera settings, and automatic JSON metadata output.
python opencv gui neuroscience data-acquisition video-recording scientific-computing machine-vision animal-behavior behavioral-neuroscience basler-camera
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Oct 22, 2025 - Python
Barnes maze video analysis in the browser: classical CV tracking, hole investigations and escape entries, latency/error/path/strategy metrics, hand corrections that propagate, and CSV/XLSX export stamped with every parameter and the tool version. No install, no GPU, no upload.
typescript computer-vision open-science spatial-memory browser-based video-analysis animal-tracking local-first rodent-behaviors behavioral-neuroscience webcodecs barnes-maze
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Oct 3, 2026 - TypeScript
Engine-agnostic .NET library for procedurally generating reproducible navigation environments — multi-room floor plans, mazes, and behavioral-research apparatuses.
procedural-generation dotnet open-science reproducibility research-software maze-generation behavioral-neuroscience
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May 19, 2026 - C#
A Python toolkit for standardizing the analysis of IntelliCage experiments
python neuroscience ethology mouse-behavior behavioral-neuroscience reversal-learning intellicage place-learning behavior-experiments
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Sep 14, 2026 - Python
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