OLAPH: Improving Factuality in Biomedical Long-form Question Answering
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Sep 10, 2024 - Python
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biomedical-research
Here are 78 public repositories matching this topic...
MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, full text, citations, and tenant-safe deployment.
python multi-tenant mcp pubmed open-access entrez ncbi fulltext pico europe-pmc citation-analysis evidence-based-medicine semantic-scholar biomedical-research systematic-review literature-search openalex model-context-protocol mcp-server streamable-http
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Sep 1, 2026 - Python
Chinese Mammography Database (CMMD dataset) Deep Learning Classification Pipeline
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Mar 15, 2022 - Jupyter Notebook
Connecting AI to biomedical data
bioinformatics mcp drug-discovery mygene opentargets mychem biomedical-research monarch-initiative ai-agent model-context-protocol mydisease
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May 14, 2026 - Python
Website for the JuliaHealth organization (powered by Franklin.jl).
medicine julia julia-language health biomedical-informatics healthcare public-health health-care electronic-health-records julia-programming-language health-informatics franklin computational-health biomedical-research digital-health clinical-informatics health-information-technology juliahealth juliamedicine juliamedical
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May 16, 2025 - Julia
Accelerate common Petri dish assays with AI.
swift machine-learning computer-vision artificial-intelligence ios-app object-detection microbiology phage plaque biomedical-research yolov5 petri-dish
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Oct 28, 2025 - Swift
Claude Code skill for verifying OpenEvidence biomedical citations against PubMed with parallel accuracy scoring and audit reports
biomedical-research claim-validation pubmed-api citation-verification model-context-protocol claude-code evidence-audit open-evidence parallel-verification
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Apr 20, 2026 - TeX
curated links and customized materials to support biomedical researchers in implementing open science approaches
training open-source computational-biology open-science reproducibility biomedical-research reproducible-computational-methods
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Feb 9, 2026 - JavaScript
Compliance-first coding harness for working with sensitive biomedical research data.
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Sep 2, 2026 - Python
A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.
computational-biology data-visualization data-analysis proteomics dataset-management biomedical-research proteomics-data-analysis user-friendly-interface clinical-proteomics proteomics-software lightweight-cloning
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Oct 15, 2025 - Jupyter Notebook
Biomedical knowledge graph builder.
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Sep 7, 2025 - Jupyter Notebook
Repository containing trained YOLOv5 object detection models used within OnePetri for Petri dish and plaque detection.
machine-learning computer-vision artificial-intelligence object-detection microbiology phage plaque biomedical-research yolov5 petri-dish
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Oct 28, 2025
Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research
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Jul 25, 2019 - HTML
My assignments and projects concerned with Biomedical Engineering
biomedical-informatics software-engineering biomedical-image-processing biomedical-engineering biomedical-data-science biomedical-image-analysis biomedical-research
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Aug 9, 2024 - TeX
B.Sc. Thesis Deep Learning & NLP research on Medical Image Captioning
nlp machine-learning deep-learning transformers cnn pytorch nltk neural-networks biomedical-image-processing keras-tensorflow publication-repository bert-models machine-learning-research biomedical-research sota-model
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Feb 3, 2024 - Python
suggestions to practice machine learning for biomedical applications
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May 4, 2021
PubMed literature assistant with journal metrics, smart filtering and local Markdown notes
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Aug 13, 2026 - JavaScript
This research project is part of a PhD by Lee Jones and will examine statistical quality in health and biomedical research by focusing on linear regression models. The goal of this study is to explore current statistical practice and identify common statistical misconceptions and errors made by researchers. We expect our results will highlight t…
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Jun 8, 2024
Repository of excel templates of routine tasks performed in the laboratory
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Nov 21, 2022
This repository provides a practical, data-centric AI/ML module for biomedical researchers. It covers R programming, data preparation, model building, and AI/ML applications using AWS SageMaker and Jupyter notebooks.
python aws machine-learning ai deep-learning tensorflow keras artificial-intelligence feature-engineering model-interpretation sagemaker responsible-ai biomedical-research data-centric-ai model-building-and-evaluation fair-data-principles
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Jun 4, 2025 - Jupyter Notebook
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