📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
R script for GenBank sequences names changing, filling-in missing molecular markers data and sequences concatenation
A brief analysis of different Covid variants for the top 20 countries with the most COVID-19 cases according to the John Hopkins Coronavirus Resource Center.
An R script to measure the potential influence of different parameters that could have affected the speed of pairwise sequence alignment, using the functions of the Biostrings package.
The project explores genetic similarities and differences between SARS-CoV-2 variants, focusing on their distribution across Asian, Hispanic, European, and African populations.
Drosophila simulans genome package forged for BSgenome
R Markdown bioinformatics analysis of SARS-CoV-2 variants using FASTA sequences, nucleotide composition, GC content, alignment, and phylogenetic visualization.
The project includes data visualization, variant sequence analysis, and a report detailing the spread and characteristics of COVID-19 variants worldwide.
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