chromosome-organization

4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method

Pipelines for Analyzing Chromosome Contact : Hi-C, P(s), gamma

Reconstructs 3D chromosome structure from sparse Hi-C data with a memetic genetic algorithm and local gradient-based optimization, using zero-count pairs

The code that was created and used for the results of my MSc thesis titled "Analysis of the evolutionary history of eukaryotic genes in relation to their spatial arrangement in the eukaryotic nucleus"