An analysis and visualization platform for 'omics data
SortMeRNA: next-generation sequence filtering and alignment tool
sensitive and precise assembly of short sequencing reads
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Meta-Omics Software for Community Analysis
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and expression of a collection of gene clusters across metagenomic and metatranscriptomic data from any kind of biome, including human, plant, animal, marine, and soil microbiomes.
Pipeline for metagenome and metatranscriptome joint assembly
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
A user-friendly pipeline for viral diversity analysis and characterization.
gNOMO2 allows integrated multi-omics analyses of microbiomes
Open-source opinionated Galaxy-based framework for microbiota analysis
Comparative Metatranscriptomics Workflow
Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
🍰 Per sequence functional classification and taxonomic assignments
Taxonomic classification of metagenomic contigs
Interactive visualisation and data annotation for meta-omics data
Repository associated with Jenior ML, et al. (2018). mSphere.
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