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mmseqs

Here are 9 public repositories matching this topic...

MMseqs2

soedinglab / MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

bioinformatics taxonomy metagenomics alignment sequence-clustering profile-search sequence-search linclust mmseqs blast

Updated Aug 24, 2026
C

soedinglab / MMseqs2-App

MMseqs2 app to run on your workstation or servers

electron docker golang bioinformatics vue docker-compose profile-search sequence-search mmseqs alphafold2 colabfold foldseek structure-search

Updated Aug 26, 2026
Vue

Tomasz-Lab / Metagenomic-DeepFRI

Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.

genomics protein-structure protein-sequences mmseqs protein-function-prediction

Updated Aug 18, 2026
Python

soedinglab / MMseqs

opensource cpp alignment sequence-clustering mmseqs

Updated Sep 19, 2016
C++

AJVelezRueda / sequence_clustering

Sequence clustering and database creation using mmseqs, from local fasta files

bioinformatics clustering bioinformatics-pipeline mmseqs fasta-sequences

Updated Dec 7, 2021
Python

SoliareofAstora / portfolio-Metagenomic-DeepFRI

Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN. This repository is for portfolio purposes only. For currently maintained version go to Małopolskie Centrum Biotechnologii repository - https://github.com/bioinf-mcb/Metagenomic-DeepFRI

genomics protein-structure protein-sequences mmseqs protein-function-prediction

Updated Jan 26, 2022
Python

cmzmasek / vfam_trees

Automated maximum-likelihood phylogeny pipeline for viral families. Discovers species via NCBI Taxonomy, downloads from GenBank, aligns with MAFFT, builds trees with FastTree (broad) and IQ-TREE (refined), and annotates internal nodes by LCA. Supports multi-marker concatenation for large DNA virus families.

bioinformatics pipeline taxonomy evolution computational-biology phylogenetics mmseqs maximum-likelihood virology mafft phyloxml viral-evolution iqtree rna-virus dna-virus trimal multi-marker-concatenation

Updated Jul 9, 2026
Python

MitsukiUsui / blastadmin

blastadmin is a command wrapper which enables users to run multiple similarity search software in a same interface.

bioinformatics mmseqs blast similarity-search

Updated Aug 26, 2018
Python

cmzmasek / repseq

Representative sequence selection for large bioinformatics datasets

machine-learning bioinformatics clustering proteins evolution computational-biology phylogenetics mmseqs iq-tree hmmer hidden-markov-models virology mafft pfam phyloxml cd-hit vaccinology universal-vaccine disease-x

Updated Jul 29, 2026
Python

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