modelling-biological-systems

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

GluPredKit aims to make blood glucose model training and prediction more accessible.

A virus simulation for pandemics based on the SIR-network concept.

A python simulation in jupyter of a simple biological model

A Python Toolbox for COPASI

Flocking algorithm implementation in c++

Size-based NPZD model for understanding phytoplankton community size structure

Virtual connectomic datasets in Alzheimer's Disease and aging using whole-brain network dynamics modelling by Arbabyazd et al. (2021)

Python package of computational models relevant to invertebrate processing, from the environment to sensor responses and to deeper neural responses in the invertebrate brain.

A project for Complex Adaptive Systems' computational models

Book is published https://frank0434.github.io/MasterThesis/

This project aims to be a handler for input creation and running of multiple RICEWQ simulations.

2D tumor angiogenesis simulation using Python and Jupyter Notebooks. Models explore tumor cell diffusion, proliferation, and vascular irrigation. Includes multiple initial conditions, diffusion coefficients, and dynamic blood vessel growth for tumor simulation.

Modelling the phenomenon of "Ecological Suicide", for a final year Master's project in Engineering Mathematics.

Patient-specific 0D cardiovascular modeling pipeline for pediatric VSD, with pre/post-surgery calibration, physiological scaling, and clinically governed validation.

2022 American Control Conference.

Modelling and plotting population growth affected by resource scarcity, an attempt to apply the logistic model of population growth computationally

Modelling biological networks course at Aalto university