End-to-end spatial transcriptomics pipeline for 10x Genomics Visium human brain glioblastoma — cell type annotation, GBM subtype characterization, and spatial neighborhood analysis
python nextflow computational-biology neuroscience bioinformatics-pipeline allen-brain-atlas umap 10x-genomics glioblastoma spatial-transcriptomics tumor-microenvironment scanpy cell-type-annotation visium squidpy singlecell-data-analysis leiden-clustering moran-statistics
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Updated
May 7, 2026 - Jupyter Notebook