myelin-segmentation

Here are 4 public repositories matching this topic...

aAbdz / DeepACSON

DeepACSON: Automated Segmentation of White Matter in 3D Electron Microscopy

electron-microscopy myelin 3d-skeleton axon-reconstruction axon-segmentation myelin-segmentation cylindrical-shape-decomposition myelinated-axon

Updated Dec 22, 2020
Python

PyTorch/MONAI training code for the AxonPath segmentation models: myelinated fibres, inner cylinders and axons in electron microscopy and brightfield images. Models are exported in BioImage.IO format for the AxonPath QuPath extension.

deep-learning pytorch image-segmentation axon myelin instance-segmentation bioimage-analysis qupath myelin-segmentation myelinated-axon monai bioimage-io g-ratio

Updated Oct 1, 2026
Python

paucabar / qupath-extension-axonpath

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QuPath extension for deep learning segmentation and morphometry of myelinated nerve fibres in EM and brightfield images

deep-learning neuroscience pytorch segmentation image-analysis electron-microscopy axon myelin instance-segmentation neuroscience-methods bioimage-analysis qupath myelin-segmentation myelinated-axon bioimage-io qupath-extension brightfield-microscopy g-ratio

Updated Oct 1, 2026
Java

paucabar / qupath-catalog-axonpath

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QuPath extension catalog for AxonPath: add this repo's URL in QuPath's Extension Manager to install the AxonPath extension

deep-learning electron-microscopy axon myelin bioimage-analysis qupath myelin-segmentation myelinated-axon qupath-extension qupath-catalog

Updated Oct 1, 2026

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