napari

napari: a fast, interactive, multi-dimensional image viewer for python

Segment Anything for Microscopy

A napari plugin for making animations

Interactive visualization of spatial omics data

GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

Feature extraction for labeled objects in images using regionprops from scikit-image

Discover, install, and share napari plugins

website for the napari image viewer

A GUI based on napari for counting cells automatically in cell migration experiments

Track and lineage visualization with btrack and Napari 🌲

Linking napari layers with Matplotlib plots

A napari plugin for itk-elastix

🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Perfect for automating microscopy workflows and building intelligent image analysis tools.

Browse your OMERO database from within napari.

StarDist plugin for napari

Multiple file format reading directly into napari using pure Python

Speed up coding/extending image analysis in Python.

Tool for segmentation in bioimaging

Segmentation of anatomical structures in a common coordinate space