nnunetv2

Playing with SimpleITK and nnU-Net to process data from the CHAOS challenge on Google Colab.

3D Slicer extension for fully automatic segmentation of the upper airway (nasal cavity, nasopharynx, and oropharynx) on CT and CBCT volumes

A simple tool for viewing 3D medical images in a jupyter notebook

Companion code for the MICCAI 2026 paper “Lost in the Folds” for uncertainty estimation in medical image segmentation.

A hybrid detection network, called Swin-hmap Det Fusion Network+ (SDF-Net+), for mediastinal lymph node detection on in-house contrast CT images

This repository contains the code and data processing pipeline for the master thesis project titled "Comparative Evaluation of Deep Learning Networks for Intracranial Aneurysm Segmentation."

Automatic Brain Tumour Segmentation through reimplementation of the popular nnUNet model

Atlas-Augmented Semantic Segmentation for Robust Ultra-Low-Field Pediatric Brain Imaging

Perivascular space segmentation model for ADNI