perturbation-analysis

inferring regulatory cellular dynamics

A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.

Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data

Illico is a python library performing fast and lightweight CPU-based wilcoxon rank-sum tests for single-cell RNASeq.

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

Python solver for the Brownian, Stochastic, or Noisy Differential Equations

Code and data from the paper "Targeted Nonlinear Adversarial Perturbations in Images and Videos".

Traffic light and sign recognition are key for Autonomous Vehicles (AVs) because perception mistakes directly influence navigation and safety. In addition to digital adversarial attacks, models are vulnerable to existing perturbations (glare, rain, dirt, or graffiti), which could lead to dangerous misclassifications.

Guided Perturbations: Self-Corrective Behavior in Convolutional Neural Networks

PEAR is a Python program that takes advantage of Petri nets and logical conditions to develop a screening tool aimed at studying the effect of perturbations in interconnected systems.

A framework to analyze neural network training stability using Lyapunov exponents and perturbation-based trajectory analysis

GRAph Parallel Environment

Measures SNV functional impact directly at the single-cell level

Computational Stability of Cubical Homology: Orthogonal Controls for Fault Isolation in Retinal Diagnostics

Agents Don't Always Do What They Think: Measuring Faithfulness in Multi-Step ReAct Agents

Perturbation Analysis for Parabolic Partial Differential Equations

Analysis and optimization of an interplanetary mission which consisted in a transfer from Saturn to an asteroid through a flyby with Jupiter, study of a planetary explorer mission for Earth observation

Perturbation Analysis of Practical Algorithms for the Maximum Scatter Travelling Salesman Problem @ ALENEX '22

Reproducible GHSA study of Fludd's 1617 Utriusque Cosmi Historia: a typed relational graph encodes the monochord's proportional grammar; six invariants are subjected to a seeded N=100 perturbation regime and a stability surface is measured. E0–E3 evidence never collapsed; the experiment is the authority.

Closed-form impulsive control for spacecraft formation flying in eccentric orbits: Chernick-D'Amico controller implementation, J2/SRP perturbation analysis, Monte Carlo robustness, and boundedness assessment using EROE dynamics.