Label-free DDA proteomics differential abundance analysis, benchmarked against a spike-in study with known ground truth and applied to an arginine transporter knockout in Francisella tularensis.
bioinformatics r computational-biology bioconductor proteomics dda mass-spectrometry maxquant false-discovery-rate label-free-quantification mixed-models robust-regression qfeatures lfq differential-abundance bacterial-pathogenesis msqrob2 spike-in-benchmark pseudo-replication francisella-tularensis
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Updated
Sep 18, 2026 - R