Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016
Distinguishing between generic and experiment-specific gene expression signals.
A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis
ARVIA: Antibiotic Resistance Variant Identifier for Pseudomonas aeruginosa
Investigating the functional relationship between P. aeruginosa core and accessory genes.
To explore the use of latent space transformations using pseudomonas transcriptomic data.
A comprehensive pan-immunophagomic analysis of Pseudomonas aeruginosa, characterizing CRISPR-Cas arrays, prophage integrations, and innate bacterial defense repertoires across diverse clinical isolates.
Bioinformatics Workshop 1 for BM327 Microbiology
Studying the sex differences in the immune response of plasmacytoid dendritic cells (pDCs) under different treatment conditions.
Phylogenomics of MDR Pseudomonas aeruginosa ST111: convergent OprD loss and mutual exclusivity with blaVIM-2
An aggregate-level simulation tool for Pseudomonas aeruginosa that captures both aggregate and cell-level behavior. My contributions are combined with contributions of Michael J Sweeney and Sarah Sundius.
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